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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified Herelleviridae
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369930 (2 seq.)
>WENV170659279
JXWR01002552
[JXWR] soil metagenome; rice field; ambient CO2
18294
18367
+
Phe
GAA
[ENA]
¢þ
>PHG181007268
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87296
87223
-
Phe
GAA
[ENA]
¡û
Identical group No.480679 (2 seq.)
>PHG183001058
MF787246
unclassified Herelleviridae
Lactobacillus phage LpeD (MF787246)
137078
137006
-
Phe
GAA
[ENA]
¡û
>PHG183001394
MG765277
unclassified Herelleviridae
Lactobacillus phage Bacchae (MG765277)
24719
24647
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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