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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified Herelleviridae
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369930 (2 seq.)
>WENV170659279
JXWR01002552
[JXWR] soil metagenome; rice field; ambient CO2
18294
18367
+
Phe
GAA
[ENA]
¢þ
>PHG181007268
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
87296
87223
-
Phe
GAA
[ENA]
¡û
Identical group No.781679 (2 seq.)
>PHG0300057
AY682195
Myoviridae
Lactobacillus virus LP65 ATCC 11303-B5 (AY682195)
49847
49777
-
Thr
TGT
[ENA]
¡û
>PHG183001397
MG765279
unclassified Herelleviridae
Lactobacillus phage Semele (MG765279)
86427
86357
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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