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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified archaeal dsDNA viruses
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452548 (1 seq.)
>PHG14102106
KC292020
unclassified archaeal dsDNA viruses
Halovirus HRTV-8 Gb1 (KC292020)
52495
52422
-
Asn
GTT
[ENA]
¡û
Identical group No.564473 (2 seq.)
>PHG0100032
AF222060
unclassified archaeal dsDNA viruses
Halorubrum phage HF2 ECOR-9 (AF222060)
20735
20810
+
Asn
GTT
[ENA]
¡û
>PHG0100231
AY190604
unclassified archaeal dsDNA viruses
Halovirus HF1 PaP3 (AY190604)
20735
20810
+
Asn
GTT
[ENA]
¡û
Identical group No.612258 (1 seq.)
>PHG14102110
KC292022
unclassified archaeal dsDNA viruses
Halovirus HRTV-5 Gb1 (KC292022)
55944
55871
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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