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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified viruses
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.746269 (28 seq.)
>WENV180182190
OAWO01001425
[OAWO] human gut metagenome; faeces
6311
6240
-
Met
CAT
[ENA]
¡û
>WENV180192129
OAXJ01002511
[OAXJ] human gut metagenome; faeces
3896
3967
+
Met
CAT
[ENA]
¡û
>WENV180306875
OBJP01019753
[OBJP] human gut metagenome; human gut
594
523
-
Met
CAT
[ENA]
¡û
>WENV183231084
OLQT01026419
[OLQT] human gut metagenome; faeces
1088
1159
+
Met
CAT
[ENA]
¡û
>WENV183428394
OMBN01030023
[OMBN] human gut metagenome; feces
114
185
+
Met
CAT
[ENA]
¡û
>WENV183429392
OMBO01019200
[OMBO] human gut metagenome; feces
280
209
-
Met
CAT
[ENA]
¡û
>PHG181002590
KX160207
Siphoviridae
Lactococcus phage 53801 (KX160207)
13752
13823
+
Met
CAT
[ENA]
¡û
>PHG181002591
KX160208
Siphoviridae
Lactococcus phage 53802 (KX160208)
15054
15125
+
Met
CAT
[ENA]
¡û
>PHG181004765
LT996078
unclassified viruses
Bacteriophage sp. (LT996078)
23448
23377
-
Met
CAT
[ENA]
¡û
>W1910871090
NCWV01000050
Bacillota
Lactococcus lactis OG2 [NCWV]
2116
2187
+
Met
CAT
[ENA]
¡û
>W1910871471
NCXC01000049
Bacillota
Lactococcus lactis KR [NCXC]
627
556
-
Met
CAT
[ENA]
¡û
>W2010939820
NCWV01000050
Bacillota
Lactococcus lactis OG2 [NCWV]
2116
2187
+
Met
CAT
[ENA]
¡û
>W2010940201
NCXC01000049
Bacillota
Lactococcus lactis KR [NCXC]
627
556
-
Met
CAT
[ENA]
¡û
>W2011351912
RAGR01000065
Bacillota
Lactococcus lactis L62-G9 [RAGR]
665
594
-
Met
CAT
[ENA]
¡û
>W2011351941
RAGS01000022
Bacillota
Lactococcus lactis L62-C9 [RAGS]
2067
2138
+
Met
CAT
[ENA]
¡û
>W2011351976
RAGT01000347
Bacillota
Lactococcus lactis L62 [RAGT]
1141
1212
+
Met
CAT
[ENA]
¡û
>W2011352027
RAGU01000053
Bacillota
Lactococcus lactis L81-E2 [RAGU]
2067
2138
+
Met
CAT
[ENA]
¡û
>W2011352073
RAGV01000034
Bacillota
Lactococcus lactis L81-D1 [RAGV]
665
594
-
Met
CAT
[ENA]
¡û
>W2011352117
RAGW01000071
Bacillota
Lactococcus lactis L81 [RAGW]
665
594
-
Met
CAT
[ENA]
¡û
>W2011965687
VBTB01000018
Bacillota
Lactococcus lactis subsp. lactis FAM 17927 [VBTB]
4905
4976
+
Met
CAT
[ENA]
¡û
>W2012064245
VJWU01000027
Bacillota
Lactococcus lactis M1734.1 [VJWU]
21431
21360
-
Met
CAT
[ENA]
¡û
>W2012341224
WITJ01000023
Bacillota
Lactococcus hircilactis DSM 28960 [WITJ]
23034
22963
-
Met
CAT
[ENA]
¡û
>W2012470433
WWDH01000124
Bacillota
Lactococcus lactis MS22314 [WWDH]
249
178
-
Met
CAT
[ENA]
¡û
>W2012470517
WWDJ01000088
Bacillota
Lactococcus lactis MS22336 [WWDJ]
249
178
-
Met
CAT
[ENA]
¡û
>W2110350486
JADNEZ010000016
Bacillota
Lactococcus lactis 1001283B150209_150212_B9 [JADNEZ]
2158
2229
+
Met
CAT
[ENA]
¡û
>W2110708118
JAIWQY010000021
Bacillota
Lactococcus sp. NH2-7C [JAIWQY]
3905
3976
+
Met
CAT
[ENA]
¡û
>W2110761291
QSNO01000041
Bacillota
RJAA.1(a) [QSNO]
4899
4970
+
Met
CAT
[ENA]
¡û
>C241290201
CP129879
Bacillota
Lactococcus lactis subsp. lactis CAB701 [CP129879]
979307
979378
+
Met
CAT
-
¡û
Identical group No.751118 (38 seq.)
>W1710818335
LKPE01000004
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
19987
19916
-
Pseudo
CAT
[ENA]
¡û
>W1711738627
MUBH01000008
Bacillota
Lactococcus lactis subsp. lactis [MUBH]
28316
28387
+
Pseudo
CAT
[ENA]
¡û
>C171110740
CP020604
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis FM03 [CP020604]
1704854
1704783
-
Met
CAT
-
¡û
>W141171161
AXZK01000070
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. LD61 [AXZK]
14926
14855
-
Pseudo
CAT
[ENA]
¡û
>PHG181004758
LT985575
unclassified viruses
Bacteriophage sp. (LT985575)
10606
10535
-
Met
CAT
[ENA]
¡û
>PHG181004759
LT985576
unclassified viruses
Bacteriophage sp. (LT985576)
22202
22273
+
Met
CAT
[ENA]
¡û
>PHG181004763
LT993225
unclassified viruses
Bacteriophage sp. (LT993225)
14684
14613
-
Met
CAT
[ENA]
¡û
>PHG181004764
LT996074
unclassified viruses
Bacteriophage sp. (LT996074)
14684
14613
-
Met
CAT
[ENA]
¡û
>PHG181004766
LT996081
unclassified viruses
Bacteriophage sp. (LT996081)
3759
3688
-
Met
CAT
[ENA]
¡û
>W1911503421
OESF01000041
Bacillota
Lactococcus lactis [OESF]
15891
15820
-
Met
CAT
[ENA]
¡û
>W1911503519
OESH01000056
Bacillota
Lactococcus lactis [OESH]
788
859
+
Met
CAT
[ENA]
¡û
>W1911503571
OESI01000022
Bacillota
Lactococcus lactis [OESI]
19918
19847
-
Met
CAT
[ENA]
¡û
>W1911503660
OESK01000013
Bacillota
Lactococcus lactis [OESK]
15791
15720
-
Met
CAT
[ENA]
¡û
>W1911534464
OLMC01000040
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
18272
18201
-
Met
CAT
[ENA]
¡û
>W1911534533
OLME01000044
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
2882
2953
+
Met
CAT
[ENA]
¡û
>W2010904654
MSFJ01000042
Bacillota
Lactococcus lactis subsp. lactis ATCC 11454 [MSFJ]
2202
2273
+
Met
CAT
[ENA]
¡û
>W2011161818
OESF01000041
Bacillota
Lactococcus lactis [OESF]
15891
15820
-
Met
CAT
[ENA]
¡û
>W2011161916
OESH01000056
Bacillota
Lactococcus lactis [OESH]
788
859
+
Met
CAT
[ENA]
¡û
>W2011161968
OESI01000022
Bacillota
Lactococcus lactis [OESI]
19918
19847
-
Met
CAT
[ENA]
¡û
>W2011162057
OESK01000013
Bacillota
Lactococcus lactis [OESK]
15791
15720
-
Met
CAT
[ENA]
¡û
>W2011167234
OLMC01000040
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
18272
18201
-
Met
CAT
[ENA]
¡û
>W2011167303
OLME01000044
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
2882
2953
+
Met
CAT
[ENA]
¡û
>W2011351434
RAGH01000042
Bacillota
Lactococcus lactis IPLA729 [RAGH]
28225
28296
+
Met
CAT
[ENA]
¡û
>W2011351781
RAGO01000050
Bacillota
Lactococcus lactis L98-E2 [RAGO]
1824
1753
-
Met
CAT
[ENA]
¡û
>W2011351825
RAGP01000052
Bacillota
Lactococcus lactis L98-C1 [RAGP]
1824
1753
-
Met
CAT
[ENA]
¡û
>W2011351860
RAGQ01000063
Bacillota
Lactococcus lactis L98 [RAGQ]
1823
1752
-
Met
CAT
[ENA]
¡û
>W2011386851
RBVM01000001
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis S50 [RBVM]
2270519
2270448
-
Met
CAT
[ENA]
¡û
>W2011386913
RBVN01000001
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis S50-1RSS [RBVN]
2278154
2278083
-
Met
CAT
[ENA]
¡û
>W2012354072
WJUK01000038
Bacillota
Lactococcus lactis subsp. lactis C17 [WJUK]
725
796
+
Met
CAT
[ENA]
¡û
>W2012354155
WJUM01000014
Bacillota
Lactococcus lactis subsp. lactis WW4 [WJUM]
3479
3550
+
Met
CAT
[ENA]
¡û
>W2012354263
WJUP01000010
Bacillota
Lactococcus lactis subsp. lactis Bu2-60 [WJUP]
52000
51929
-
Met
CAT
[ENA]
¡û
>C211039370
CP031926
Bacillota
Lactococcus lactis subsp. lactis 223 [CP031926]
2283984
2283913
-
Met
CAT
-
¡û
>C211145507
CP061322
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis S50 [CP061322]
2270519
2270448
-
Met
CAT
-
¡û
>C211219060
CP065984
Bacillota
Lactococcus lactis FDAARGOS_1064 [CP065984]
1418367
1418438
+
Met
CAT
-
¡û
>C231273174
CP090359
Bacillota
Lactococcus lactis subsp. lactis 223 [CP090359]
315689
315760
+
Met
CAT
-
¡û
>C231334429
CP093413
Bacillota
Lactococcus lactis AH1 [CP093413]
2229233
2229162
-
Met
CAT
-
¡û
>C241342135
CP138309
Bacillota
Lactococcus lactis B26 [CP138309]
2180824
2180753
-
Met
CAT
-
¡û
>W1610682742
LKPE01000004
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
19987
19916
-
Pseudo
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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