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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified viruses
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.336360 (19 seq.)
>C171110751
CP020604
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis FM03 [CP020604]
1170894
1170821
-
Pro
TGG
-
¡û
>PHG181004757
LT985568
unclassified viruses
Bacteriophage sp. (LT985568)
743
670
-
Pro
TGG
[ENA]
¡û
>PHG181004762
LT993224
unclassified viruses
Bacteriophage sp. (LT993224)
1370
1443
+
Pro
TGG
[ENA]
¡û
>W1911503422
OESF01000052
Bacillota
Lactococcus lactis [OESF]
9857
9784
-
Pro
TGG
[ENA]
¡û
>W1911503497
OESH01000011
Bacillota
Lactococcus lactis [OESH]
20699
20626
-
Pro
TGG
[ENA]
¡û
>W1911503575
OESI01000045
Bacillota
Lactococcus lactis [OESI]
17741
17668
-
Pro
TGG
[ENA]
¡û
>W1911503671
OESK01000083
Bacillota
Lactococcus lactis [OESK]
528
601
+
Pro
TGG
[ENA]
¡û
>W1911534472
OLMC01000052
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
15963
15890
-
Pro
TGG
[ENA]
¡û
>W1911534534
OLME01000053
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
979
1052
+
Pro
TGG
[ENA]
¡û
>W2011161819
OESF01000052
Bacillota
Lactococcus lactis [OESF]
9857
9784
-
Pro
TGG
[ENA]
¡û
>W2011161894
OESH01000011
Bacillota
Lactococcus lactis [OESH]
20699
20626
-
Pro
TGG
[ENA]
¡û
>W2011161972
OESI01000045
Bacillota
Lactococcus lactis [OESI]
17741
17668
-
Pro
TGG
[ENA]
¡û
>W2011162068
OESK01000083
Bacillota
Lactococcus lactis [OESK]
528
601
+
Pro
TGG
[ENA]
¡û
>W2011167242
OLMC01000052
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
15963
15890
-
Pro
TGG
[ENA]
¡û
>W2011167304
OLME01000053
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
979
1052
+
Pro
TGG
[ENA]
¡û
>W2012354073
WJUK01000041
Bacillota
Lactococcus lactis subsp. lactis C17 [WJUK]
14454
14381
-
Pro
TGG
[ENA]
¡û
>C211039382
CP031926
Bacillota
Lactococcus lactis subsp. lactis 223 [CP031926]
1730319
1730246
-
Pro
TGG
-
¡û
>C231119883
CP070382
Bacillota
Lactococcus lactis KF140 [CP070382]
866578
866651
+
Pro
TGG
-
¡û
>C231273186
CP090359
Bacillota
Lactococcus lactis subsp. lactis 223 [CP090359]
869356
869429
+
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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