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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352276 (1 seq.)
>CHL090102267
DQ422812
Viridiplantae
Chlorokybus atmophyticus
30138
30064
-
Ala
GGC
[ENA]
¡û
Identical group No.586944 (1 seq.)
>CHL090100883
AP006715
Rhodophyta
Porphyra yezoensis
117415
117343
-
Ala
GGC
[ENA]
¡û
Identical group No.597249 (1 seq.)
>CHL090100367
AF166114
Viridiplantae
Mesostigma viride
19452
19380
-
Ala
GGC
[ENA]
¡û
Identical group No.611249 (1 seq.)
>CHL1810008225
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
118433
118361
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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