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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173210 (1 seq.)
>SC0100033
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1305622
1305704
+
Ser
AGA
[ENA]
¡û
Identical group No.187367 (7 seq.)
>FG090100019
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
7553
7636
+
Ser
AGA
[ENA]
¡û
>FG090100036
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
59812
59896
+
Ser
AGA
[ENA]
¡û
>FG090100064
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
413567
413484
-
Ser
AGA
[ENA]
¡û
>FG090100070
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
433714
433631
-
Ser
AGA
[ENA]
¡û
>FG091100002
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
544347
544430
+
Ser
AGA
[ENA]
¡û
>FG091100026
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1251458
1251375
-
Ser
AGA
[ENA]
¡û
>FG091100028
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1121821
1121738
-
Ser
AGA
[ENA]
¡û
Identical group No.187369 (30 seq.)
>WENV180229007
OBCG01002067
[OBCG] human gut metagenome; human gut
1296
1379
+
Ser
AGA
[ENA]
¢þ
>WENV180229933
OBCJ01002279
[OBCJ] human gut metagenome; human gut
66
149
+
Ser
AGA
[ENA]
¢þ
>WENV180280413
OBHY01003936
[OBHY] human gut metagenome; Tissue from the tricuspid valve
670
753
+
Ser
AGA
[ENA]
¢þ
>WENV180409887
OBUW01000049
[OBUW] human gut metagenome; faeces
39217
39300
+
Ser
AGA
[ENA]
¢þ
>WENV180409888
OBUW01000049
[OBUW] human gut metagenome; faeces
48423
48342
-
Ser
AGA
[ENA]
¢þ
>WENV180409922
OBUW01000116
[OBUW] human gut metagenome; faeces
14245
14328
+
Ser
AGA
[ENA]
¢þ
>WENV180410117
OBUW01001704
[OBUW] human gut metagenome; faeces
519
602
+
Ser
AGA
[ENA]
¢þ
>WENV180568765
OCLN01009953
[OCLN] human gut metagenome; human gut
116
33
-
Ser
AGA
[ENA]
¢þ
>WENV180569174
OCLQ01000396
[OCLQ] human gut metagenome; human gut
1367
1450
+
Ser
AGA
[ENA]
¢þ
>WENV180732956
ODGY01009936
[ODGY] human metagenome; G_DNA_Supragingival plaque
849
766
-
Ser
AGA
[ENA]
¢þ
>WENV180735276
ODGZ01129892
[ODGZ] human metagenome; G_DNA_Supragingival plaque
137
54
-
Ser
AGA
[ENA]
¢þ
>WENV180801514
ODJD01045493
[ODJD] human metagenome; G_DNA_Supragingival plaque
109
192
+
Ser
AGA
[ENA]
¢þ
>WENV180889870
ODMN01200099
[ODMN] human metagenome; G_DNA_Supragingival plaque
59
140
+
Ser
AGA
[ENA]
¢þ
>WENV180999522
ODVT01026817
[ODVT] human metagenome; G_DNA_Buccal mucosa
428
347
-
Ser
AGA
[ENA]
¢þ
>WENV181675962
OGOP01021107
[OGOP] human gut metagenome; faeces
89
8
-
Ser
AGA
[ENA]
¢þ
>WENV181813269
OGTC01000016
[OGTC] human gut metagenome; fecal sample 2 from infant 9
67844
67927
+
Ser
AGA
[ENA]
¢þ
>WENV181815141
OGTJ01000013
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
35026
35109
+
Ser
AGA
[ENA]
¢þ
>WENV182629518
OJKS01022307
[OJKS] metagenome; surface
241
324
+
Ser
AGA
[ENA]
¢þ
>WENV182827345
OKCY01001107
[OKCY] human gut metagenome; human gut
641
724
+
Ser
AGA
[ENA]
¢þ
>WENV182847616
OKKB01000119
[OKKB] human gut metagenome; human gut
45092
45175
+
Ser
AGA
[ENA]
¢þ
>WENV182847620
OKKB01000138
[OKKB] human gut metagenome; human gut
4968
5051
+
Ser
AGA
[ENA]
¢þ
>WENV182847621
OKKB01000138
[OKKB] human gut metagenome; human gut
14163
14082
-
Ser
AGA
[ENA]
¢þ
>WENV182849300
OKKP01000631
[OKKP] human gut metagenome; human gut
871
790
-
Ser
AGA
[ENA]
¢þ
>W1910424384
FVPM01004410
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
27
110
+
Ser
AGA
[ENA]
¡û
>FG090100529
CM000437
Ascomycota
Pichia stipitis CBS 6054
1511937
1511854
-
Ser
AGA
[ENA]
¡û
>FG090100549
CP000498
Ascomycota
Pichia stipitis CBS 6054
263351
263432
+
Ser
AGA
[ENA]
¡û
>FG090100577
CP000500
Ascomycota
Pichia stipitis CBS 6054
680902
680985
+
Ser
AGA
[ENA]
¡û
>FG090100582
CP000500
Ascomycota
Pichia stipitis CBS 6054
1193159
1193242
+
Ser
AGA
[ENA]
¡û
>FG090100583
CP000500
Ascomycota
Pichia stipitis CBS 6054
1194322
1194403
+
Ser
AGA
[ENA]
¡û
>FG091100078
CP000496
Ascomycota
Pichia stipitis CBS 6054
1408810
1408727
-
Ser
AGA
[ENA]
¡û
Identical group No.190885 (2 seq.)
>FG090100719
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1672929
1673013
+
Ser
AGA
[ENA]
¡û
>FG090100731
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2623900
2623816
-
Ser
AGA
[ENA]
¡û
Identical group No.190886 (18 seq.)
>FG090100685
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
366422
366338
-
Ser
AGA
[ENA]
¡û
>FG090100700
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2530497
2530413
-
Ser
AGA
[ENA]
¡û
>FG090100724
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2420271
2420355
+
Ser
AGA
[ENA]
¡û
>FG090100727
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2467432
2467516
+
Ser
AGA
[ENA]
¡û
>FG090100732
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2074773
2074689
-
Ser
AGA
[ENA]
¡û
>FG090100744
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1305306
1305390
+
Ser
AGA
[ENA]
¡û
>FG090100748
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1725800
1725881
+
Ser
AGA
[ENA]
¡û
>FG090100749
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1956174
1956255
+
Ser
AGA
[ENA]
¡û
>FG090100753
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3142358
3142442
+
Ser
AGA
[ENA]
¡û
>FG090100761
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
667304
667220
-
Ser
AGA
[ENA]
¡û
>FG090100770
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3012132
3012213
+
Ser
AGA
[ENA]
¡û
>FG090100771
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3139935
3140019
+
Ser
AGA
[ENA]
¡û
>FG090100777
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3031462
3031378
-
Ser
AGA
[ENA]
¡û
>FG091100127
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1567585
1567669
+
Ser
AGA
[ENA]
¡û
>FG091100136
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1606136
1606052
-
Ser
AGA
[ENA]
¡û
>FG091100150
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2094566
2094650
+
Ser
AGA
[ENA]
¡û
>FG091100151
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2293554
2293638
+
Ser
AGA
[ENA]
¡û
>FG091100152
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3218568
3218652
+
Ser
AGA
[ENA]
¡û
Identical group No.194236 (7 seq.)
>FG090100643
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
744835
744754
-
Ser
AGA
[ENA]
¡û
>FG090100654
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
847701
847782
+
Ser
AGA
[ENA]
¡û
>FG090100657
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1066628
1066709
+
Ser
AGA
[ENA]
¡û
>FG090100671
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1776073
1775992
-
Ser
AGA
[ENA]
¡û
>FG090100682
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
473280
473199
-
Ser
AGA
[ENA]
¡û
>FG092110020
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
5437747
5437828
+
Ser
AGA
[ENA]
¡û
>FG092110028
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3047758
3047677
-
Ser
AGA
[ENA]
¡û
Identical group No.196762 (20 seq.)
>WENV180295845
OBIZ01380645
[OBIZ] soil metagenome; soil
70
153
+
Ser
AGA
[ENA]
¢þ
>WENV180314826
OBKG01091734
[OBKG] human gut metagenome; human gut
172
91
-
Ser
AGA
[ENA]
¢þ
>WENV170659180
JXWR01001175
[JXWR] soil metagenome; rice field; ambient CO2
5291
5210
-
Ser
AGA
[ENA]
¢þ
>WENV170659288
JXWR01002880
[JXWR] soil metagenome; rice field; ambient CO2
3813
3730
-
Ser
AGA
[ENA]
¢þ
>WENV170659315
JXWR01003255
[JXWR] soil metagenome; rice field; ambient CO2
2794
2875
+
Ser
AGA
[ENA]
¢þ
>WENV170659316
JXWR01003256
[JXWR] soil metagenome; rice field; ambient CO2
1275
1358
+
Ser
AGA
[ENA]
¢þ
>WENV170659563
JXWR01010270
[JXWR] soil metagenome; rice field; ambient CO2
177
258
+
Ser
AGA
[ENA]
¢þ
>WENV170659637
JXWR01018527
[JXWR] soil metagenome; rice field; ambient CO2
35
118
+
Ser
AGA
[ENA]
¢þ
>WENV170659644
JXWR01019331
[JXWR] soil metagenome; rice field; ambient CO2
107
26
-
Ser
AGA
[ENA]
¢þ
>SC0100002
NC_001133
Ascomycota
Saccharomyces cerevisiae S288c
182598
182515
-
Ser
AGA
[ENA]
¡û
>SC0100005
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
227078
227159
+
Ser
AGA
[ENA]
¡û
>SC0100025
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
437769
437850
+
Ser
AGA
[ENA]
¡û
>SC0100038
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
981051
980970
-
Ser
AGA
[ENA]
¡û
>SC0100045
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
86603
86686
+
Ser
AGA
[ENA]
¡û
>SC0100089
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
561748
561665
-
Ser
AGA
[ENA]
¡û
>SC0100101
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
133101
133018
-
Ser
AGA
[ENA]
¡û
>SC0100123
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
524086
524005
-
Ser
AGA
[ENA]
¡û
>SC0100159
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
168025
167942
-
Ser
AGA
[ENA]
¡û
>SC0100172
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
259240
259157
-
Ser
AGA
[ENA]
¡û
>W1511390123
JSXG01000173
Gammaproteobacteria
Stenotrophomonas maltophilia B418 [JSXG]
468
387
-
Ser
AGA
[ENA]
¡û
Identical group No.199426 (9 seq.)
>FG090100085
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
433781
433698
-
Ser
AGA
[ENA]
¡û
>FG090100113
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
288414
288497
+
Ser
AGA
[ENA]
¡û
>FG090100141
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
117599
117682
+
Ser
AGA
[ENA]
¡û
>FG090100143
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
145661
145744
+
Ser
AGA
[ENA]
¡û
>FG090100149
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
795437
795520
+
Ser
AGA
[ENA]
¡û
>FG090100150
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
847825
847908
+
Ser
AGA
[ENA]
¡û
>FG090100176
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
98042
97959
-
Ser
AGA
[ENA]
¡û
>FG090100193
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
154268
154351
+
Ser
AGA
[ENA]
¡û
>FG090100218
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
895491
895574
+
Ser
AGA
[ENA]
¡û
Identical group No.205473 (6 seq.)
>FG090100285
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1480778
1480859
+
Ser
AGA
[ENA]
¡û
>FG090100287
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1670348
1670429
+
Ser
AGA
[ENA]
¡û
>FG090100288
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1772581
1772662
+
Ser
AGA
[ENA]
¡û
>FG090100293
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1764443
1764362
-
Ser
AGA
[ENA]
¡û
>FG090100296
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1677747
1677666
-
Ser
AGA
[ENA]
¡û
>FG090100336
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1039481
1039565
+
Ser
AGA
[ENA]
¡û
Identical group No.208687 (6 seq.)
>FG090100403
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
785743
785824
+
Ser
AGA
[ENA]
¡û
>FG090100413
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
214177
214096
-
Ser
AGA
[ENA]
¡û
>FG090100455
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
831132
831051
-
Ser
AGA
[ENA]
¡û
>FG090100456
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
830627
830546
-
Ser
AGA
[ENA]
¡û
>FG090100472
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1980853
1980936
+
Ser
AGA
[ENA]
¡û
>FG091100103
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
566066
566149
+
Ser
AGA
[ENA]
¡û
Identical group No.218438 (12 seq.)
>FG090200002
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1243078
1243172
+
Ser
AGA
[ENA]
¡û
>FU090900067
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1243078
1243172
+
Ser
AGA
[ENA]
¡û
>FG091200001
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
574947
575041
+
Ser
AGA
[ENA]
¡û
>FG091200002
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
575303
575209
-
Ser
AGA
[ENA]
¡û
>FG091200003
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
594060
594154
+
Ser
AGA
[ENA]
¡û
>FG091200004
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
605104
605010
-
Ser
AGA
[ENA]
¡û
>FG091200007
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1099913
1099819
-
Ser
AGA
[ENA]
¡û
>FG091900190
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
574947
575041
+
Ser
AGA
[ENA]
¡û
>FG091900191
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
594060
594154
+
Ser
AGA
[ENA]
¡û
>FG091900197
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
605104
605010
-
Ser
AGA
[ENA]
¡û
>FG091900198
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
575303
575209
-
Ser
AGA
[ENA]
¡û
>FG091900216
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1099913
1099819
-
Ser
AGA
[ENA]
¡û
Identical group No.224302 (1 seq.)
>FG090100750
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2045280
2045363
+
Ser
AGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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