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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.564727 (2 seq.)
>FG091100161
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2065167
2065095
-
Ala
CGC
[ENA]
¡û
>FG091100167
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
650017
649943
-
Ala
CGC
[ENA]
¡û
Identical group No.604515 (1 seq.)
>FG091100171
CR382133
Ascomycota
Debaryomyces hansenii CBS767
992058
991986
-
Ala
CGC
[ENA]
¡û
Identical group No.629596 (1 seq.)
>FG091100046
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1411628
1411702
+
Ala
CGC
[ENA]
¡û
Identical group No.629598 (1 seq.)
>FG091100048
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1523233
1523307
+
Ala
CGC
[ENA]
¡û
Identical group No.714657 (1 seq.)
>FG092910024
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4796977
4797059
+
Ala
CGC
[ENA]
¡û
Identical group No.782075 (2 seq.)
>FU090900058
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
357639
357721
+
Ala
CGC
[ENA]
¡û
>FU090900062
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
481955
481873
-
Ala
CGC
[ENA]
¡û
Identical group No.810060 (1 seq.)
>FG090100387
AL590449
Microsporidia
Encephalitozoon_cuniculi_GB-M1
147667
147738
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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