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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.586975 (1 seq.)
>FG090800113
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
383135
383220
+
Thr
CGT
[ENA]
¡û
Identical group No.597173 (1 seq.)
>FG091900201
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1277694
1277608
-
Thr
CGT
[ENA]
¡û
Identical group No.687808 (1 seq.)
>FG090100714
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
498308
498379
+
Thr
CGT
[ENA]
¡û
Identical group No.706729 (1 seq.)
>FG090100422
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1246831
1246902
+
Thr
CGT
[ENA]
¡û
Identical group No.714650 (1 seq.)
>FG090100250
CR382134
Ascomycota
Debaryomyces hansenii CBS767
538482
538556
+
Thr
CGT
[ENA]
¡û
Identical group No.714654 (1 seq.)
>FG092110011
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3164749
3164820
+
Thr
CGT
[ENA]
¡û
Identical group No.735069 (2 seq.)
>WENV182629491
OJKS01011246
[OJKS] metagenome; surface
620
547
-
Thr
CGT
[ENA]
¢þ
>FG090100119
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
39547
39474
-
Thr
CGT
[ENA]
¡û
Identical group No.735090 (1 seq.)
>FG091100087
CP000497
Ascomycota
Pichia stipitis CBS 6054
609447
609520
+
Thr
CGT
[ENA]
¡û
Identical group No.762144 (1 seq.)
>SC0100145
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
46807
46736
-
Thr
CGT
[ENA]
¡û
Identical group No.762148 (1 seq.)
>FG091100041
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1211752
1211823
+
Thr
CGT
[ENA]
¡û
Identical group No.762149 (1 seq.)
>FG091100042
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1211850
1211921
+
Thr
CGT
[ENA]
¡û
Identical group No.816405 (1 seq.)
>FG090100355
AL590442
Microsporidia
Encephalitozoon_cuniculi_GB-M1
63208
63280
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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