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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.597164 (1 seq.)
>FG090100680
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1067165
1067091
-
Arg
TCG
[ENA]
¡û
Identical group No.659405 (5 seq.)
>FG090800033
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1071772
1071683
-
Arg
TCG
[ENA]
¡û
>FG090800041
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
116270
116359
+
Arg
TCG
[ENA]
¡û
>FG090800048
AE017350
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
27134
27045
-
Arg
TCG
[ENA]
¡û
>FG091800024
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1250086
1249996
-
Arg
TCG
[ENA]
¡û
>FG091800025
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1270980
1271070
+
Arg
TCG
[ENA]
¡û
Identical group No.687813 (45 seq.)
>FG090200013
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2252688
2252777
+
Arg
TCG
[ENA]
¡û
>FG090200018
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
578083
578172
+
Arg
TCG
[ENA]
¡û
>FG090200024
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3036684
3036775
+
Arg
TCG
[ENA]
¡û
>FG090500011
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
23876
23787
-
Arg
TCG
[ENA]
¡û
>FG090500015
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
890750
890662
-
Arg
TCG
[ENA]
¡û
>FG090500021
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3060624
3060712
+
Arg
TCG
[ENA]
¡û
>FG090500022
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
547748
547659
-
Arg
TCG
[ENA]
¡û
>FG090500024
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2275827
2275738
-
Arg
TCG
[ENA]
¡û
>FG090500025
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2567621
2567710
+
Arg
TCG
[ENA]
¡û
>FG090500026
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3319879
3319969
+
Arg
TCG
[ENA]
¡û
>FG090500027
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3920801
3920889
+
Arg
TCG
[ENA]
¡û
>FG090800112
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
244695
244784
+
Arg
TCG
[ENA]
¡û
>FG090800120
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
826003
825910
-
Arg
TCG
[ENA]
¡û
>FG090800128
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1239251
1239339
+
Arg
TCG
[ENA]
¡û
>FG090800151
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1793890
1793797
-
Arg
TCG
[ENA]
¡û
>FU090900207
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
23876
23788
-
Arg
TCG
[ENA]
¡û
>FU090900214
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2252688
2252776
+
Arg
TCG
[ENA]
¡û
>FU090900226
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
890750
890662
-
Arg
TCG
[ENA]
¡û
>FU090900263
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
578083
578171
+
Arg
TCG
[ENA]
¡û
>FU090900272
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
3060624
3060712
+
Arg
TCG
[ENA]
¡û
>FU090900294
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2567621
2567709
+
Arg
TCG
[ENA]
¡û
>FU090900299
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3036685
3036774
+
Arg
TCG
[ENA]
¡û
>FU090900301
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3319880
3319968
+
Arg
TCG
[ENA]
¡û
>FU090900305
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3920801
3920889
+
Arg
TCG
[ENA]
¡û
>FU090900310
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2275827
2275739
-
Arg
TCG
[ENA]
¡û
>FU090900319
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
547748
547660
-
Arg
TCG
[ENA]
¡û
>FG091200009
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
616338
616430
+
Arg
TCG
[ENA]
¡û
>FG091200011
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
701819
701731
-
Arg
TCG
[ENA]
¡û
>FG091200012
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1352451
1352363
-
Arg
TCG
[ENA]
¡û
>FG091500006
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
903006
903095
+
Arg
TCG
[ENA]
¡û
>FG091500011
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1747232
1747322
+
Arg
TCG
[ENA]
¡û
>FG091500014
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1161701
1161790
+
Arg
TCG
[ENA]
¡û
>FG091500016
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3660647
3660559
-
Arg
TCG
[ENA]
¡û
>FG091500017
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3669911
3670000
+
Arg
TCG
[ENA]
¡û
>FG091500018
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3730800
3730891
+
Arg
TCG
[ENA]
¡û
>FG091800036
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
723870
723782
-
Arg
TCG
[ENA]
¡û
>FG091900232
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
616339
616427
+
Arg
TCG
[ENA]
¡û
>FG091900237
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
903006
903094
+
Arg
TCG
[ENA]
¡û
>FG091900254
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1747233
1747321
+
Arg
TCG
[ENA]
¡û
>FG091900266
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1352451
1352363
-
Arg
TCG
[ENA]
¡û
>FG091900276
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
701819
701731
-
Arg
TCG
[ENA]
¡û
>FG091900282
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1161701
1161789
+
Arg
TCG
[ENA]
¡û
>FG091900292
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3669911
3669999
+
Arg
TCG
[ENA]
¡û
>FG091900294
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3730801
3730889
+
Arg
TCG
[ENA]
¡û
>FG091900301
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3660647
3660559
-
Arg
TCG
[ENA]
¡û
Identical group No.826664 (1 seq.)
>FG090100374
AL590447
Microsporidia
Encephalitozoon_cuniculi_GB-M1
171161
171231
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK