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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271575 (2 seq.)
>PHG14101937
JX415535
Podoviridae
Escherichia phage ECBP1 S-CAM20 (JX415535)
35154
35228
+
Ile
AAT
[ENA]
¡û
>PHG14102778
KJ135004
Podoviridae
Escherichia phage Bp4 VD13 (KJ135004)
40551
40477
-
Ile
AAT
[ENA]
¡û
Identical group No.320901 (3 seq.)
>WENV181198268
OERD01005871
[OERD] metagenome; water of meat washing
77
155
+
Ile
AAT
[ENA]
¢þ
>PHG14102545
KF192075
Podoviridae
Escherichia phage vB_EcoP_PhAPEC5 Sarco S13 (KF192075)
34700
34778
+
Ile
AAT
[ENA]
¡û
>PHG14102610
KF562340
Podoviridae
Escherichia phage vB_EcoP_PhAPEC7 QB3 (KF562340)
35085
35163
+
Ile
AAT
[ENA]
¡û
Identical group No.388352 (1 seq.)
>PHG181008029
MH358458
Podoviridae
Escherichia phage phi G17 (MH358458)
26482
26404
-
Ile
AAT
[ENA]
¡û
Identical group No.421692 (2 seq.)
>WENV170560111
CYGL01000073
[CYGL] human gut metagenome;
6798
6722
-
Ile
AAT
[ENA]
¢þ
>PHG181008001
MH321493
Siphoviridae
Salmonella phage Skate (MH321493)
22171
22095
-
Ile
AAT
[ENA]
¡û
Identical group No.422492 (1 seq.)
>PHG14101987
JX880034
Podoviridae
Escherichia phage IME11 Pseudomonas putida GB-1 (JX880034)
27972
27897
-
Ile
AAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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