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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = ACT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8693 (5 seq.)
>W1711942990
NBCM01000018
Gammaproteobacteria
Escherichia coli [NBCM]
182648
182741
+
Ser
ACT
[ENA]
¡û
>PHG181004679
LT603033
Myoviridae
Escherichia phage vB_Eco_slurp01 (LT603033)
15634
15725
+
Ser
ACT
[ENA]
¡û
>PHG181008282
MH383160
Myoviridae
Escherichia phage UB (MH383160)
274002
273911
-
Ser
ACT
[ENA]
¡û
>W1910139061
BIEC01000090
Gammaproteobacteria
Escherichia coli 72-B56-55-1 [BIEC]
181499
181590
+
Ser
ACT
[ENA]
¡û
>PHG14103174
KM507819
Myoviridae
Escherichia phage 121Q JBDs5 (KM507819)
75464
75555
+
Ser
ACT
[ENA]
¡û
Identical group No.83909 (2 seq.)
>PHG181002611
KX245012
Ackermannviridae
Salmonella phage GG32 (KX245012)
20272
20360
+
Ser
ACT
[ENA]
¡û
>PHG181003729
KY000003
Ackermannviridae
Salmonella phage STP07 (KY000003)
4569
4657
+
Ser
ACT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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