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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66608 (1 seq.)
>PHG181004642
LN887844
Myoviridae
Pseudomonas phage VCM (LN887844)
73016
72927
-
Ser
AGA
[ENA]
¡û
Identical group No.160109 (6 seq.)
>PHG181006835
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
16492
16575
+
Ser
AGA
[ENA]
¡û
>PHG181007065
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
16488
16571
+
Ser
AGA
[ENA]
¡û
>PHG181007079
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
16482
16565
+
Ser
AGA
[ENA]
¡û
>PHG181007093
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
16481
16564
+
Ser
AGA
[ENA]
¡û
>PHG181007107
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
16481
16564
+
Ser
AGA
[ENA]
¡û
>PHG181007121
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
16488
16571
+
Ser
AGA
[ENA]
¡û
Identical group No.211462 (1 seq.)
>PHG181006806
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
16799
16881
+
Ser
AGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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