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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537853 (2 seq.)
>PHG181003293
KX397373
Myoviridae
Erwinia phage vB_EamM_Stratton (KX397373)
3358
3433
+
Gly
CCC
[ENA]
¡û
>PHG14101926
JX316028
Siphoviridae
Erwinia phage phiEaH2 S-CAM20 (JX316028)
169219
169294
+
Gly
CCC
[ENA]
¡û
Identical group No.561439 (1 seq.)
>PHG181003231
KX397364
Myoviridae
Erwinia phage vB_EamM_Asesino (KX397364)
3308
3383
+
Gly
CCC
[ENA]
¡û
Identical group No.755908 (1 seq.)
>PHG181007793
MH153799
Siphoviridae
Microbacterium phage Appa (MH153799)
30394
30320
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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