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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240107 (1 seq.)
>PHG181008465
MH576962
Siphoviridae
Streptomyces phage Satis (MH576962)
124817
124893
+
Pro
CGG
[ENA]
¡û
Identical group No.252558 (1 seq.)
>PHG14300273
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
61499
61576
+
Pro
CGG
[ENA]
¡û
Identical group No.263771 (1 seq.)
>PHG181002148
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
113092
113169
+
Pro
CGG
[ENA]
¡û
Identical group No.270286 (1 seq.)
>PHG181004227
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
66918
66995
+
Pro
CGG
[ENA]
¡û
Identical group No.504478 (1 seq.)
>PHG181007567
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
7317
7392
+
Pro
CGG
[ENA]
¡û
Identical group No.525405 (12 seq.)
>PHG181004062
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
49245
49320
+
Pro
CGG
[ENA]
¡û
>PHG181004083
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
49720
49795
+
Pro
CGG
[ENA]
¡û
>PHG181004104
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
49110
49185
+
Pro
CGG
[ENA]
¡û
>PHG181004129
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
54253
54328
+
Pro
CGG
[ENA]
¡û
>PHG181004150
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
49836
49911
+
Pro
CGG
[ENA]
¡û
>PHG181004173
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
50276
50351
+
Pro
CGG
[ENA]
¡û
>PHG14101654
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
48467
48542
+
Pro
CGG
[ENA]
¡û
>PHG14101696
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
49317
49392
+
Pro
CGG
[ENA]
¡û
>PHG14101717
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
48504
48579
+
Pro
CGG
[ENA]
¡û
>PHG14101738
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
49792
49867
+
Pro
CGG
[ENA]
¡û
>PHG14101757
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
49997
50072
+
Pro
CGG
[ENA]
¡û
>PHG14101813
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
158021
157946
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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