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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTC
HIT:
38 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237648 (1 seq.)
>PHG181004980
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
84530
84606
+
Glu
CTC
[ENA]
¡û
Identical group No.238031 (3 seq.)
>PHG181008518
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
86785
86861
+
Glu
CTC
[ENA]
¡û
>PHG181008667
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
85557
85633
+
Glu
CTC
[ENA]
¡û
>W1810079353
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
2660
2736
+
Glu
CTC
[ENA]
¡û
Identical group No.238313 (1 seq.)
>PHG181008616
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
96734
96810
+
Glu
CTC
[ENA]
¡û
Identical group No.238649 (1 seq.)
>PHG181008483
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
85293
85369
+
Glu
CTC
[ENA]
¡û
Identical group No.238650 (1 seq.)
>PHG181008632
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
86342
86418
+
Glu
CTC
[ENA]
¡û
Identical group No.279413 (5 seq.)
>PHG0100445
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
91876
91950
+
Glu
CTC
[ENA]
¡û
>PHG181001226
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
92540
92614
+
Glu
CTC
[ENA]
¡û
>PHG181001639
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
92266
92340
+
Glu
CTC
[ENA]
¡û
>PHG181006172
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
93222
93296
+
Glu
CTC
[ENA]
¡û
>PHG14100885
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
93243
93317
+
Glu
CTC
[ENA]
¡û
Identical group No.297347 (30 seq.)
>PHG0100531
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
91617
91691
+
Glu
CTC
[ENA]
¡û
>PHG0100551
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
93754
93828
+
Glu
CTC
[ENA]
¡û
>PHG0100571
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
92638
92712
+
Glu
CTC
[ENA]
¡û
>PHG0100591
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
94077
94151
+
Glu
CTC
[ENA]
¡û
>PHG181001618
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
95065
95139
+
Glu
CTC
[ENA]
¡û
>PHG181003527
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
94307
94381
+
Glu
CTC
[ENA]
¡û
>PHG181003551
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
97900
97974
+
Glu
CTC
[ENA]
¡û
>PHG181003589
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
92558
92632
+
Glu
CTC
[ENA]
¡û
>PHG181003627
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
94354
94428
+
Glu
CTC
[ENA]
¡û
>PHG181006195
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
92930
93004
+
Glu
CTC
[ENA]
¡û
>PHG181006218
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
95686
95760
+
Glu
CTC
[ENA]
¡û
>PHG181006241
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
93639
93713
+
Glu
CTC
[ENA]
¡û
>PHG181006267
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
91488
91562
+
Glu
CTC
[ENA]
¡û
>PHG181006297
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
94378
94452
+
Glu
CTC
[ENA]
¡û
>PHG181007325
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
96261
96335
+
Glu
CTC
[ENA]
¡û
>PHG181007347
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
95803
95877
+
Glu
CTC
[ENA]
¡û
>PHG181007656
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
94753
94827
+
Glu
CTC
[ENA]
¡û
>PHG181007678
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
93960
94034
+
Glu
CTC
[ENA]
¡û
>PHG181007983
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
93636
93710
+
Glu
CTC
[ENA]
¡û
>PHG14100201
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
92687
92761
+
Glu
CTC
[ENA]
¡û
>PHG14100223
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
93344
93418
+
Glu
CTC
[ENA]
¡û
>PHG14101191
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
93767
93841
+
Glu
CTC
[ENA]
¡û
>PHG14101282
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
93093
93167
+
Glu
CTC
[ENA]
¡û
>PHG14101598
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
93071
93145
+
Glu
CTC
[ENA]
¡û
>PHG14102234
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
95233
95307
+
Glu
CTC
[ENA]
¡û
>PHG14102258
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
93571
93645
+
Glu
CTC
[ENA]
¡û
>PHG14102442
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
92583
92657
+
Glu
CTC
[ENA]
¡û
>PHG14102484
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
94303
94377
+
Glu
CTC
[ENA]
¡û
>PHG14102988
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
93535
93609
+
Glu
CTC
[ENA]
¡û
>PHG14103350
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
94555
94629
+
Glu
CTC
[ENA]
¡û
Identical group No.318963 (2 seq.)
>PHG181001763
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
6542
6618
+
Glu
CTC
[ENA]
¡û
>PHG181007565
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
6541
6617
+
Glu
CTC
[ENA]
¡û
Identical group No.407107 (1 seq.)
>PHG14102397
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
61355
61429
+
Glu
CTC
[ENA]
¡û
Identical group No.414277 (1 seq.)
>PHG181002133
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
108661
108737
+
Glu
CTC
[ENA]
¡û
Identical group No.450695 (1 seq.)
>PHG181007233
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
85741
85815
+
Glu
CTC
[ENA]
¡û
Identical group No.480681 (4 seq.)
>PHG0300003
AF022214
Siphoviridae
Mycobacterium virus D29 TP-J34 (AF022214)
4523
4596
+
Glu
CTC
[ENA]
¡û
>PHG183000018
AP018480
Siphoviridae
Mycobacterium virus D29 (AP018480)
4523
4596
+
Glu
CTC
[ENA]
¡û
>PHG183000530
KX758538
Siphoviridae
Mycobacterium phage Kerberos (KX758538)
4514
4587
+
Glu
CTC
[ENA]
¡û
>PHG183001716
MH513985
Siphoviridae
Mycobacterium phage Tomathan (MH513985)
4514
4587
+
Glu
CTC
[ENA]
¡û
Identical group No.550967 (2 seq.)
>PHG181003465
KX641263
Siphoviridae
Mycobacterium phage Kalpine (KX641263)
6245
6318
+
Glu
CTC
[ENA]
¡û
>PHG14101133
JN408461
Siphoviridae
Mycobacterium phage Trixie Charlie (JN408461)
6117
6190
+
Glu
CTC
[ENA]
¡û
Identical group No.572042 (1 seq.)
>PHG183000017
AP018476
Siphoviridae
Mycobacterium phage C3 (AP018476)
4513
4586
+
Glu
CTC
[ENA]
¡û
Identical group No.581896 (1 seq.)
>PHG181008417
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
94281
94354
+
Glu
CTC
[ENA]
¡û
Identical group No.592226 (1 seq.)
>PHG181001213
KR063281
Siphoviridae
Gordonia phage GMA2 (KR063281)
58806
58733
-
Glu
CTC
[ENA]
¡û
Identical group No.602856 (1 seq.)
>PHG14100692
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
132042
132116
+
Glu
CTC
[ENA]
¡û
Identical group No.619407 (2 seq.)
>PHG183000493
KX574455
Siphoviridae
Mycobacterium phage Pomar16 (KX574455)
4555
4628
+
Glu
CTC
[ENA]
¡û
>PHG183000554
KX897981
Siphoviridae
Mycobacterium phage StarStuff (KX897981)
4514
4587
+
Glu
CTC
[ENA]
¡û
Identical group No.620393 (1 seq.)
>PHG14102850
KJ473422
Myoviridae
Acinetobacter phage vB_AbaM_Acibel004 TahiMoana (KJ473422)
63097
63172
+
Glu
CTC
[ENA]
¡û
Identical group No.627269 (1 seq.)
>PHG181008382
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
90514
90587
+
Glu
CTC
[ENA]
¡û
Identical group No.646283 (1 seq.)
>PHG181003675
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
105704
105631
-
Glu
CTC
[ENA]
¡û
Identical group No.684264 (6 seq.)
>PHG181006842
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
17581
17653
+
Glu
CTC
[ENA]
¡û
>PHG181007072
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
17577
17649
+
Glu
CTC
[ENA]
¡û
>PHG181007086
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
17510
17582
+
Glu
CTC
[ENA]
¡û
>PHG181007100
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
17570
17642
+
Glu
CTC
[ENA]
¡û
>PHG181007114
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
17570
17642
+
Glu
CTC
[ENA]
¡û
>PHG181007128
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
17577
17649
+
Glu
CTC
[ENA]
¡û
Identical group No.684276 (2 seq.)
>PHG181001501
KT285706
Siphoviridae
Mycobacterium phage Pioneer (KT285706)
5939
6011
+
Glu
CTC
[ENA]
¡û
>PHG181007388
MG872840
Siphoviridae
Mycobacterium phage Phonnegut (MG872840)
5939
6011
+
Glu
CTC
[ENA]
¡û
Identical group No.684277 (11 seq.)
>PHG181002123
KU613353
Siphoviridae
Mycobacterium phage Catalina (KU613353)
5907
5979
+
Glu
CTC
[ENA]
¡û
>PHG181002315
KU716094
Siphoviridae
Mycobacterium phage Eidsmoe (KU716094)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181002316
KU716095
Siphoviridae
Mycobacterium phage Myxus (KU716095)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003451
KX585252
Siphoviridae
Mycobacterium phage HortumSL17 (KX585252)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003471
KX664447
Siphoviridae
Mycobacterium phage Phaeder (KX664447)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003490
KX685355
Siphoviridae
Mycobacterium phage Qobbit (KX685355)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181007365
MG872835
Siphoviridae
Mycobacterium phage Conquerage (MG872835)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181007389
MG872842
Siphoviridae
Mycobacterium phage Scherzo (MG872842)
5939
6011
+
Glu
CTC
[ENA]
¡û
>PHG181008279
MH371122
Siphoviridae
Mycobacterium phage Priya (MH371122)
5937
6009
+
Glu
CTC
[ENA]
¡û
>PHG14100915
JF704110
Siphoviridae
Mycobacterium virus Packman Oosterbaan (JF704110)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG14101231
JN699005
Siphoviridae
Mycobacterium virus Alma G (JN699005)
5913
5985
+
Glu
CTC
[ENA]
¡û
Identical group No.719295 (1 seq.)
>PHG181007831
MH155868
Podoviridae
Streptomyces phage FlowerPower (MH155868)
17179
17251
+
Glu
CTC
[ENA]
¡û
Identical group No.750783 (1 seq.)
>PHG181006009
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
81439
81511
+
Glu
CTC
[ENA]
¡û
Identical group No.755898 (1 seq.)
>PHG181006810
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
17664
17736
+
Glu
CTC
[ENA]
¡û
Identical group No.755901 (1 seq.)
>PHG181006823
MG518519
Podoviridae
Streptomyces phage Manuel (MG518519)
17356
17428
+
Glu
CTC
[ENA]
¡û
Identical group No.778893 (1 seq.)
>PHG181004236
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
69204
69278
+
Glu
CTC
[ENA]
¡û
Identical group No.779628 (5 seq.)
>PHG181005381
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
85888
85959
+
Glu
CTC
[ENA]
¡û
>PHG181005416
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
87270
87341
+
Glu
CTC
[ENA]
¡û
>PHG181005465
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
86336
86407
+
Glu
CTC
[ENA]
¡û
>PHG181005499
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
86244
86315
+
Glu
CTC
[ENA]
¡û
>PHG14103288
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
86672
86743
+
Glu
CTC
[ENA]
¡û
Identical group No.786872 (17 seq.)
>PHG0100213
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
95998
96069
+
Glu
CTC
[ENA]
¡û
>PHG181001469
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
92813
92884
+
Glu
CTC
[ENA]
¡û
>PHG181001539
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
93539
93610
+
Glu
CTC
[ENA]
¡û
>PHG181003186
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
93703
93774
+
Glu
CTC
[ENA]
¡û
>PHG181003501
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
93453
93524
+
Glu
CTC
[ENA]
¡û
>PHG181007375
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
92864
92935
+
Glu
CTC
[ENA]
¡û
>PHG181007633
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
94997
95068
+
Glu
CTC
[ENA]
¡û
>PHG181007957
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
93379
93450
+
Glu
CTC
[ENA]
¡û
>PHG14100870
JF704092
Myoviridae
Mycobacterium phage Alice MB56Spyo045 (JF704092)
92902
92973
+
Glu
CTC
[ENA]
¡û
>PHG14100933
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
93049
93120
+
Glu
CTC
[ENA]
¡û
>PHG14101069
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
94755
94826
+
Glu
CTC
[ENA]
¡û
>PHG14101141
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
97054
97125
+
Glu
CTC
[ENA]
¡û
>PHG14101161
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
93495
93566
+
Glu
CTC
[ENA]
¡û
>PHG14101239
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
96654
96725
+
Glu
CTC
[ENA]
¡û
>PHG14101261
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
92175
92246
+
Glu
CTC
[ENA]
¡û
>PHG14101304
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
94658
94729
+
Glu
CTC
[ENA]
¡û
>PHG14102213
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
92071
92142
+
Glu
CTC
[ENA]
¡û
Identical group No.793247 (1 seq.)
>PHG181005184
MF319184
Siphoviridae
Mycobacterium phage GenevaB15 (MF319184)
61963
62034
+
Glu
CTC
[ENA]
¡û
Identical group No.794642 (3 seq.)
>PHG0300085
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
63103
63174
+
Glu
CTC
[ENA]
¡û
>PHG183000063
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
63150
63221
+
Glu
CTC
[ENA]
¡û
>PHG183000612
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
62709
62780
+
Glu
CTC
[ENA]
¡û
Identical group No.802042 (1 seq.)
>PHG181005986
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
91700
91771
+
Glu
CTC
[ENA]
¡û
Identical group No.806780 (1 seq.)
>PHG0100510
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
93010
93081
+
Glu
CTC
[ENA]
¡û
Identical group No.814994 (2 seq.)
>PHG181005311
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
83499
83570
+
Glu
CTC
[ENA]
¡û
>PHG181005345
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
85797
85868
+
Glu
CTC
[ENA]
¡û
Identical group No.828337 (2 seq.)
>PHG181001738
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
60350
60421
+
Glu
CTC
[ENA]
¡û
>PHG14101330
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
60202
60273
+
Glu
CTC
[ENA]
¡û
Identical group No.836949 (1 seq.)
>PHG181008552
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
86654
86725
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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