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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GAC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.265233 (1 seq.)
>PHG14102129
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
42683
42609
-
Val
GAC
[ENA]
¡û
Identical group No.525404 (8 seq.)
>PHG181004113
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
51037
51112
+
Val
GAC
[ENA]
¡û
>PHG181004158
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
51756
51831
+
Val
GAC
[ENA]
¡û
>PHG181004181
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
52196
52271
+
Val
GAC
[ENA]
¡û
>PHG14101662
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
50988
51063
+
Val
GAC
[ENA]
¡û
>PHG14101704
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
51838
51913
+
Val
GAC
[ENA]
¡û
>PHG14101725
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
50430
50505
+
Val
GAC
[ENA]
¡û
>PHG14101745
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
51712
51787
+
Val
GAC
[ENA]
¡û
>PHG14101820
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
156101
156026
-
Val
GAC
[ENA]
¡û
Identical group No.658338 (49 seq.)
>PHG0300032
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
99725
99797
+
Val
GAC
[ENA]
¡û
>PHG0300090
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
95714
95786
+
Val
GAC
[ENA]
¡û
>PHG0300112
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
95458
95530
+
Val
GAC
[ENA]
¡û
>PHG0300117
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
97136
97208
+
Val
GAC
[ENA]
¡û
>PHG0300122
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
96020
96092
+
Val
GAC
[ENA]
¡û
>PHG183000146
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
96270
96342
+
Val
GAC
[ENA]
¡û
>PHG183000214
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
96599
96671
+
Val
GAC
[ENA]
¡û
>PHG183000227
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
97316
97388
+
Val
GAC
[ENA]
¡û
>PHG183000246
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
98794
98866
+
Val
GAC
[ENA]
¡û
>PHG183000254
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
95996
96068
+
Val
GAC
[ENA]
¡û
>PHG183000455
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
97430
97502
+
Val
GAC
[ENA]
¡û
>PHG183000516
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
97664
97736
+
Val
GAC
[ENA]
¡û
>PHG183000522
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
97691
97763
+
Val
GAC
[ENA]
¡û
>PHG183000528
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
101413
101485
+
Val
GAC
[ENA]
¡û
>PHG183000536
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
96287
96359
+
Val
GAC
[ENA]
¡û
>PHG183000545
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
97738
97810
+
Val
GAC
[ENA]
¡û
>PHG183001073
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
96952
97024
+
Val
GAC
[ENA]
¡û
>PHG183001081
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
96314
96386
+
Val
GAC
[ENA]
¡û
>PHG183001089
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
99298
99370
+
Val
GAC
[ENA]
¡û
>PHG183001096
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
97021
97093
+
Val
GAC
[ENA]
¡û
>PHG183001115
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
97934
98006
+
Val
GAC
[ENA]
¡û
>PHG183001404
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
99644
99716
+
Val
GAC
[ENA]
¡û
>PHG183001413
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
99186
99258
+
Val
GAC
[ENA]
¡û
>PHG183001426
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
97179
97251
+
Val
GAC
[ENA]
¡û
>PHG183001546
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
99017
99089
+
Val
GAC
[ENA]
¡û
>PHG183001553
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
98570
98642
+
Val
GAC
[ENA]
¡û
>PHG183001561
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
97904
97976
+
Val
GAC
[ENA]
¡û
>PHG183001624
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
97322
97394
+
Val
GAC
[ENA]
¡û
>PHG183001631
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
97018
97090
+
Val
GAC
[ENA]
¡û
>PHG14300037
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
96550
96622
+
Val
GAC
[ENA]
¡û
>PHG14300134
JF704092
Myoviridae
Mycobacterium phage Alice MB56Spyo045 (JF704092)
95593
95665
+
Val
GAC
[ENA]
¡û
>PHG14300140
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
96973
97045
+
Val
GAC
[ENA]
¡û
>PHG14300146
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
97337
97409
+
Val
GAC
[ENA]
¡û
>PHG14300169
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
98501
98573
+
Val
GAC
[ENA]
¡û
>PHG14300185
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
101116
101188
+
Val
GAC
[ENA]
¡û
>PHG14300191
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
97324
97396
+
Val
GAC
[ENA]
¡û
>PHG14300198
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
97496
97568
+
Val
GAC
[ENA]
¡û
>PHG14300207
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
100381
100453
+
Val
GAC
[ENA]
¡û
>PHG14300212
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
96486
96558
+
Val
GAC
[ENA]
¡û
>PHG14300217
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
96532
96604
+
Val
GAC
[ENA]
¡û
>PHG14300224
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
98096
98168
+
Val
GAC
[ENA]
¡û
>PHG14300261
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
96453
96525
+
Val
GAC
[ENA]
¡û
>PHG14300367
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
96361
96433
+
Val
GAC
[ENA]
¡û
>PHG14300371
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
99048
99120
+
Val
GAC
[ENA]
¡û
>PHG14300377
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
97300
97372
+
Val
GAC
[ENA]
¡û
>PHG14300416
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
96313
96385
+
Val
GAC
[ENA]
¡û
>PHG14300426
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
98034
98106
+
Val
GAC
[ENA]
¡û
>PHG14300490
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
96917
96989
+
Val
GAC
[ENA]
¡û
>PHG14300529
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
97937
98009
+
Val
GAC
[ENA]
¡û
Identical group No.669906 (3 seq.)
>PHG0300126
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
98067
98139
+
Val
GAC
[ENA]
¡û
>PHG183001104
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
95306
95378
+
Val
GAC
[ENA]
¡û
>PHG14300042
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
96728
96800
+
Val
GAC
[ENA]
¡û
Identical group No.684217 (2 seq.)
>PHG183000283
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
14102
14176
+
Val
GAC
[ENA]
¡û
>PHG183001529
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
14148
14222
+
Val
GAC
[ENA]
¡û
Identical group No.703719 (1 seq.)
>PHG183001036
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
93764
93836
+
Val
GAC
[ENA]
¡û
Identical group No.704805 (1 seq.)
>PHG14101682
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
68535
68609
+
Val
GAC
[ENA]
¡û
Identical group No.714270 (1 seq.)
>PHG0300105
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
95075
95147
+
Val
GAC
[ENA]
¡û
Identical group No.744958 (1 seq.)
>PHG14300110
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
135761
135834
+
Val
GAC
[ENA]
¡û
Identical group No.750766 (1 seq.)
>PHG181002140
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
111078
111152
+
Val
GAC
[ENA]
¡û
Identical group No.778890 (1 seq.)
>PHG181004229
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
67347
67421
+
Val
GAC
[ENA]
¡û
Identical group No.779632 (2 seq.)
>PHG183000920
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
105314
105385
+
Val
GAC
[ENA]
¡û
>PHG14300517
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
105876
105947
+
Val
GAC
[ENA]
¡û
Identical group No.793239 (3 seq.)
>PHG183000908
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
105328
105399
+
Val
GAC
[ENA]
¡û
>PHG183000914
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
106910
106981
+
Val
GAC
[ENA]
¡û
>PHG183000925
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
105920
105991
+
Val
GAC
[ENA]
¡û
Identical group No.808953 (1 seq.)
>PHG183000823
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
103328
103399
+
Val
GAC
[ENA]
¡û
Identical group No.812551 (2 seq.)
>PHG183001739
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
104847
104918
+
Val
GAC
[ENA]
¡û
>W1830001531
PEKU01000161
Actinomycetota
Streptomyces sp. JV178 [PEKU]
2252
2323
+
Val
GAC
[ENA]
¡û
Identical group No.814989 (1 seq.)
>PHG183001770
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
105470
105541
+
Val
GAC
[ENA]
¡û
Identical group No.814990 (2 seq.)
>PHG183000896
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
103532
103603
+
Val
GAC
[ENA]
¡û
>PHG183000903
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
105907
105978
+
Val
GAC
[ENA]
¡û
Identical group No.818050 (2 seq.)
>PHG183001744
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
108205
108276
+
Val
GAC
[ENA]
¡û
>PHG183001762
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
107706
107777
+
Val
GAC
[ENA]
¡û
Identical group No.836940 (1 seq.)
>PHG183001750
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
109125
109196
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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