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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GAG
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77590 (7 seq.)
>PHG183000620
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
49963
50051
+
Leu
GAG
[ENA]
¡û
>PHG183000627
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
50438
50526
+
Leu
GAG
[ENA]
¡û
>PHG183000637
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
54971
55059
+
Leu
GAG
[ENA]
¡û
>PHG183000643
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
50555
50643
+
Leu
GAG
[ENA]
¡û
>PHG183000648
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
50995
51083
+
Leu
GAG
[ENA]
¡û
>PHG14300280
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
50511
50599
+
Leu
GAG
[ENA]
¡û
>PHG14300290
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
157302
157214
-
Leu
GAG
[ENA]
¡û
Identical group No.97201 (1 seq.)
>PHG14101678
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
62304
62391
+
Leu
GAG
[ENA]
¡û
Identical group No.97204 (4 seq.)
>PHG181004110
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
49828
49915
+
Leu
GAG
[ENA]
¡û
>PHG14101659
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
49187
49274
+
Leu
GAG
[ENA]
¡û
>PHG14101701
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
50035
50122
+
Leu
GAG
[ENA]
¡û
>PHG14101722
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
49222
49309
+
Leu
GAG
[ENA]
¡û
Identical group No.102975 (2 seq.)
>PHG181008376
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
74797
74882
+
Leu
GAG
[ENA]
¡û
>PHG181008411
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
78551
78636
+
Leu
GAG
[ENA]
¡û
Identical group No.107937 (1 seq.)
>PHG14101762
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
50739
50826
+
Leu
GAG
[ENA]
¡û
Identical group No.146662 (1 seq.)
>PHG14102125
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
45700
45617
-
Leu
GAG
[ENA]
¡û
Identical group No.180104 (2 seq.)
>PHG181005487
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
104794
104876
+
Leu
GAG
[ENA]
¡û
>PHG14103308
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
105356
105438
+
Leu
GAG
[ENA]
¡û
Identical group No.189799 (2 seq.)
>PHG181005405
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
104809
104891
+
Leu
GAG
[ENA]
¡û
>PHG181005440
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
106391
106473
+
Leu
GAG
[ENA]
¡û
Identical group No.200804 (1 seq.)
>PHG181004999
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
102844
102926
+
Leu
GAG
[ENA]
¡û
Identical group No.202882 (2 seq.)
>PHG181008505
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
104316
104398
+
Leu
GAG
[ENA]
¡û
>W1810079375
PEKU01000161
Actinomycetota
Streptomyces sp. JV178 [PEKU]
1721
1803
+
Leu
GAG
[ENA]
¡û
Identical group No.204392 (2 seq.)
>PHG181005335
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
103012
103094
+
Leu
GAG
[ENA]
¡û
>PHG181005369
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
105387
105469
+
Leu
GAG
[ENA]
¡û
Identical group No.204395 (1 seq.)
>PHG181008690
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
104939
105021
+
Leu
GAG
[ENA]
¡û
Identical group No.206420 (2 seq.)
>PHG181008540
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
107536
107618
+
Leu
GAG
[ENA]
¡û
>PHG181008654
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
107036
107118
+
Leu
GAG
[ENA]
¡û
Identical group No.211461 (1 seq.)
>PHG181005523
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
105401
105483
+
Leu
GAG
[ENA]
¡û
Identical group No.217844 (1 seq.)
>PHG181008576
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
108466
108548
+
Leu
GAG
[ENA]
¡û
Identical group No.220541 (2 seq.)
>PHG181001778
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
17462
17545
+
Leu
GAG
[ENA]
¡û
>PHG181007580
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
17508
17591
+
Leu
GAG
[ENA]
¡û
Identical group No.279410 (46 seq.)
>PHG0100207
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
33239
33313
+
Leu
GAG
[ENA]
¡û
>PHG0100440
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
30384
30458
+
Leu
GAG
[ENA]
¡û
>PHG0100526
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
30845
30919
+
Leu
GAG
[ENA]
¡û
>PHG0100545
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
32243
32317
+
Leu
GAG
[ENA]
¡û
>PHG0100565
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
31268
31342
+
Leu
GAG
[ENA]
¡û
>PHG0100585
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
31761
31835
+
Leu
GAG
[ENA]
¡û
>PHG181001220
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
30933
31007
+
Leu
GAG
[ENA]
¡û
>PHG181001464
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
30496
30570
+
Leu
GAG
[ENA]
¡û
>PHG181001534
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
31915
31989
+
Leu
GAG
[ENA]
¡û
>PHG181001610
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
32097
32171
+
Leu
GAG
[ENA]
¡û
>PHG181001634
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
30324
30398
+
Leu
GAG
[ENA]
¡û
>PHG181003178
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
30891
30965
+
Leu
GAG
[ENA]
¡û
>PHG181003496
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
31850
31924
+
Leu
GAG
[ENA]
¡û
>PHG181003519
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
31928
32002
+
Leu
GAG
[ENA]
¡û
>PHG181003581
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
31166
31240
+
Leu
GAG
[ENA]
¡û
>PHG181006166
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
30912
30986
+
Leu
GAG
[ENA]
¡û
>PHG181006188
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
30524
30598
+
Leu
GAG
[ENA]
¡û
>PHG181006235
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
31927
32001
+
Leu
GAG
[ENA]
¡û
>PHG181006261
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
29412
29486
+
Leu
GAG
[ENA]
¡û
>PHG181006290
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
31818
31892
+
Leu
GAG
[ENA]
¡û
>PHG181007319
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
33889
33963
+
Leu
GAG
[ENA]
¡û
>PHG181007368
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
30653
30727
+
Leu
GAG
[ENA]
¡û
>PHG181007649
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
32693
32767
+
Leu
GAG
[ENA]
¡û
>PHG181007673
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
31941
32015
+
Leu
GAG
[ENA]
¡û
>PHG181007950
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
31222
31296
+
Leu
GAG
[ENA]
¡û
>PHG181007977
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
31924
31998
+
Leu
GAG
[ENA]
¡û
>PHG14100194
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
29627
29701
+
Leu
GAG
[ENA]
¡û
>PHG14100217
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
31231
31305
+
Leu
GAG
[ENA]
¡û
>PHG14100880
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
30933
31007
+
Leu
GAG
[ENA]
¡û
>PHG14100927
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
31728
31802
+
Leu
GAG
[ENA]
¡û
>PHG14101063
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
32414
32488
+
Leu
GAG
[ENA]
¡û
>PHG14101135
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
34599
34673
+
Leu
GAG
[ENA]
¡û
>PHG14101156
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
32295
32369
+
Leu
GAG
[ENA]
¡û
>PHG14101185
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
31927
32001
+
Leu
GAG
[ENA]
¡û
>PHG14101233
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
32857
32931
+
Leu
GAG
[ENA]
¡û
>PHG14101256
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
30483
30557
+
Leu
GAG
[ENA]
¡û
>PHG14101276
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
32041
32115
+
Leu
GAG
[ENA]
¡û
>PHG14101297
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
32230
32304
+
Leu
GAG
[ENA]
¡û
>PHG14101592
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
31987
32061
+
Leu
GAG
[ENA]
¡û
>PHG14102207
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
31115
31189
+
Leu
GAG
[ENA]
¡û
>PHG14102228
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
31611
31685
+
Leu
GAG
[ENA]
¡û
>PHG14102251
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
31254
31328
+
Leu
GAG
[ENA]
¡û
>PHG14102436
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
30757
30831
+
Leu
GAG
[ENA]
¡û
>PHG14102478
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
31932
32006
+
Leu
GAG
[ENA]
¡û
>PHG14102982
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
31823
31897
+
Leu
GAG
[ENA]
¡û
>PHG14103344
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
31929
32003
+
Leu
GAG
[ENA]
¡û
Identical group No.360761 (2 seq.)
>PHG181007627
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
34336
34410
+
Leu
GAG
[ENA]
¡û
>PHG14100864
JF704092
Myoviridae
Mycobacterium phage Alice MB56Spyo045 (JF704092)
29572
29646
+
Leu
GAG
[ENA]
¡û
Identical group No.388339 (1 seq.)
>PHG181003543
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
36346
36420
+
Leu
GAG
[ENA]
¡û
Identical group No.407097 (1 seq.)
>PHG14100706
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
149554
149627
+
Leu
GAG
[ENA]
¡û
Identical group No.414279 (1 seq.)
>PHG181002143
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
112066
112142
+
Leu
GAG
[ENA]
¡û
Identical group No.523538 (2 seq.)
>PHG181003620
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
30732
30805
+
Leu
GAG
[ENA]
¡û
>PHG181007341
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
31995
32068
+
Leu
GAG
[ENA]
¡û
Identical group No.536336 (1 seq.)
>PHG181005979
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
32157
32230
+
Leu
GAG
[ENA]
¡û
Identical group No.553389 (1 seq.)
>PHG0100505
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
32799
32872
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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