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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GCC
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244057 (6 seq.)
>PHG0100601
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
97485
97560
+
Gly
GCC
[ENA]
¡û
>PHG181003510
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
97082
97157
+
Gly
GCC
[ENA]
¡û
>PHG181006276
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
94724
94799
+
Gly
GCC
[ENA]
¡û
>PHG181007665
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
97988
98063
+
Gly
GCC
[ENA]
¡û
>PHG14100210
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
95968
96043
+
Gly
GCC
[ENA]
¡û
>PHG14102243
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
98467
98542
+
Gly
GCC
[ENA]
¡û
Identical group No.348972 (1 seq.)
>PHG14101672
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
59336
59412
+
Gly
GCC
[ENA]
¡û
Identical group No.460844 (3 seq.)
>PHG0300030
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
99155
99228
+
Gly
GCC
[ENA]
¡û
>PHG0300088
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
95144
95217
+
Gly
GCC
[ENA]
¡û
>PHG0300110
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
94888
94961
+
Gly
GCC
[ENA]
¡û
Identical group No.553391 (1 seq.)
>PHG0100515
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
94110
94183
+
Gly
GCC
[ENA]
¡û
Identical group No.564472 (2 seq.)
>PHG0300115
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
96566
96639
+
Gly
GCC
[ENA]
¡û
>PHG0300120
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
95450
95523
+
Gly
GCC
[ENA]
¡û
Identical group No.684271 (1 seq.)
>PHG181007161
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
62207
62281
+
Gly
GCC
[ENA]
¡û
Identical group No.684279 (2 seq.)
>PHG181001775
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
16969
17043
+
Gly
GCC
[ENA]
¡û
>PHG181007577
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
17015
17089
+
Gly
GCC
[ENA]
¡û
Identical group No.697197 (11 seq.)
>PHG181004058
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
47891
47965
+
Gly
GCC
[ENA]
¡û
>PHG181004079
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
48366
48440
+
Gly
GCC
[ENA]
¡û
>PHG181004100
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
47763
47837
+
Gly
GCC
[ENA]
¡û
>PHG181004125
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
52899
52973
+
Gly
GCC
[ENA]
¡û
>PHG181004146
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
47911
47985
+
Gly
GCC
[ENA]
¡û
>PHG181004169
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
48351
48425
+
Gly
GCC
[ENA]
¡û
>PHG14101651
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
47120
47194
+
Gly
GCC
[ENA]
¡û
>PHG14101693
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
47968
48042
+
Gly
GCC
[ENA]
¡û
>PHG14101714
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
47158
47232
+
Gly
GCC
[ENA]
¡û
>PHG14101735
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
47867
47941
+
Gly
GCC
[ENA]
¡û
>PHG14101810
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
159946
159872
-
Gly
GCC
[ENA]
¡û
Identical group No.731965 (1 seq.)
>PHG181005613
MF403008
Myoviridae
Agrobacterium phage Atu_ph07 (MF403008)
303309
303235
-
Gly
GCC
[ENA]
¡û
Identical group No.744943 (1 seq.)
>PHG14100688
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
130519
130591
+
Gly
GCC
[ENA]
¡û
Identical group No.750761 (1 seq.)
>PHG181002128
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
104297
104371
+
Gly
GCC
[ENA]
¡û
Identical group No.756557 (1 seq.)
>PHG14101754
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
48546
48620
+
Gly
GCC
[ENA]
¡û
Identical group No.778892 (1 seq.)
>PHG181004234
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
69039
69113
+
Gly
GCC
[ENA]
¡û
Identical group No.779626 (1 seq.)
>PHG14103292
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
88218
88289
+
Gly
GCC
[ENA]
¡û
Identical group No.793250 (4 seq.)
>PHG181005386
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
87136
87207
+
Gly
GCC
[ENA]
¡û
>PHG181005421
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
88520
88591
+
Gly
GCC
[ENA]
¡û
>PHG181005470
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
87884
87955
+
Gly
GCC
[ENA]
¡û
>PHG181005504
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
87494
87565
+
Gly
GCC
[ENA]
¡û
Identical group No.794641 (2 seq.)
>PHG0300081
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
61029
61100
+
Gly
GCC
[ENA]
¡û
>PHG183000060
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
60984
61055
+
Gly
GCC
[ENA]
¡û
Identical group No.799208 (1 seq.)
>PHG14101890
JX195166
Siphoviridae
Pectobacterium phage My1 (JX195166)
34954
34881
-
Gly
GCC
[ENA]
¡û
Identical group No.802038 (1 seq.)
>PHG181003972
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
60693
60764
+
Gly
GCC
[ENA]
¡û
Identical group No.802039 (17 seq.)
>PHG181004371
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
34552
34479
-
Gly
GCC
[ENA]
¡û
>PHG181004849
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
87136
87209
+
Gly
GCC
[ENA]
¡û
>PHG181005748
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181005771
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181005794
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181005817
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181005840
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181005863
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
34410
34337
-
Gly
GCC
[ENA]
¡û
>PHG181006453
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
9806
9879
+
Gly
GCC
[ENA]
¡û
>PHG181008040
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
75141
75214
+
Gly
GCC
[ENA]
¡û
>PHG181008064
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
73432
73505
+
Gly
GCC
[ENA]
¡û
>PHG181008090
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
73088
73161
+
Gly
GCC
[ENA]
¡û
>PHG181008118
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
76638
76711
+
Gly
GCC
[ENA]
¡û
>PHG181008198
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
79048
79121
+
Gly
GCC
[ENA]
¡û
>PHG181008220
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
73432
73505
+
Gly
GCC
[ENA]
¡û
>PHG181008246
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
74719
74792
+
Gly
GCC
[ENA]
¡û
>PHG14103106
KM236244
Siphoviridae
Salmonella virus Stitch LIKBL0011 (KM236244)
33830
33757
-
Gly
GCC
[ENA]
¡û
Identical group No.802047 (1 seq.)
>PHG181005993
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
92582
92653
+
Gly
GCC
[ENA]
¡û
Identical group No.806778 (1 seq.)
>PHG0100091
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
5694
5621
-
Gly
GCC
[ENA]
¡û
Identical group No.808961 (1 seq.)
>PHG181004984
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
86303
86374
+
Gly
GCC
[ENA]
¡û
Identical group No.812491 (4 seq.)
>PHG181008524
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
88491
88562
+
Gly
GCC
[ENA]
¡û
>PHG181008638
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
88023
88094
+
Gly
GCC
[ENA]
¡û
>PHG181008673
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
86901
86972
+
Gly
GCC
[ENA]
¡û
>W1810079359
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
4003
4074
+
Gly
GCC
[ENA]
¡û
Identical group No.814996 (2 seq.)
>PHG181005316
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
85102
85173
+
Gly
GCC
[ENA]
¡û
>PHG181005350
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
87400
87471
+
Gly
GCC
[ENA]
¡û
Identical group No.815008 (2 seq.)
>PHG181008384
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
91130
91201
+
Gly
GCC
[ENA]
¡û
>PHG181008419
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
94892
94963
+
Gly
GCC
[ENA]
¡û
Identical group No.815013 (1 seq.)
>PHG181008618
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
97384
97457
+
Gly
GCC
[ENA]
¡û
Identical group No.818060 (1 seq.)
>PHG181008489
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
86637
86708
+
Gly
GCC
[ENA]
¡û
Identical group No.820582 (1 seq.)
>PHG181001386
KT070867
Siphoviridae
Bacillus phage PBC2 (KT070867)
150934
150864
-
Gly
GCC
[ENA]
¡û
Identical group No.823683 (2 seq.)
>PHG181002409
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
35016
34943
-
Gly
GCC
[ENA]
¡û
>PHG181002500
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
34127
34054
-
Gly
GCC
[ENA]
¡û
Identical group No.823690 (1 seq.)
>PHG181006008
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
80967
81038
+
Gly
GCC
[ENA]
¡û
Identical group No.824021 (1 seq.)
>PHG14102148
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
150427
150355
-
Gly
GCC
[ENA]
¡û
Identical group No.826223 (1 seq.)
>PHG14102113
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
50544
50474
-
Gly
GCC
[ENA]
¡û
Identical group No.836950 (1 seq.)
>PHG181008558
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
89076
89147
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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