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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452555 (3 seq.)
>PHG181005324
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
89911
89984
+
Ala
GGC
[ENA]
¡û
>PHG181005478
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
92115
92188
+
Ala
GGC
[ENA]
¡û
>PHG14103299
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
92456
92529
+
Ala
GGC
[ENA]
¡û
Identical group No.536337 (2 seq.)
>PHG0100513
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
93384
93457
+
Ala
GGC
[ENA]
¡û
>PHG181005989
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
92072
92145
+
Ala
GGC
[ENA]
¡û
Identical group No.573074 (2 seq.)
>PHG183001735
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
91123
91196
+
Ala
GGC
[ENA]
¡û
>W1830001527
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
8490
8563
+
Ala
GGC
[ENA]
¡û
Identical group No.581840 (3 seq.)
>PHG183001741
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
93820
93893
+
Ala
GGC
[ENA]
¡û
>PHG183001758
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
92608
92681
+
Ala
GGC
[ENA]
¡û
>PHG183001766
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
91583
91656
+
Ala
GGC
[ENA]
¡û
Identical group No.652615 (1 seq.)
>PHG183001748
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
94075
94150
+
Ala
GGC
[ENA]
¡û
Identical group No.684252 (3 seq.)
>PHG181005394
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
92133
92205
+
Ala
GGC
[ENA]
¡û
>PHG181005429
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
93517
93589
+
Ala
GGC
[ENA]
¡û
>PHG181005512
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
92490
92562
+
Ala
GGC
[ENA]
¡û
Identical group No.719289 (2 seq.)
>PHG181004990
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
90362
90434
+
Ala
GGC
[ENA]
¡û
>PHG181005358
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
92204
92276
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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