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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348976 (1 seq.)
>PHG14300274
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
61660
61736
+
Pro
GGG
[ENA]
¡û
Identical group No.422491 (1 seq.)
>PHG14101758
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
50080
50156
+
Pro
GGG
[ENA]
¡û
Identical group No.697199 (11 seq.)
>PHG181004063
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
49328
49402
+
Pro
GGG
[ENA]
¡û
>PHG181004084
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
49803
49877
+
Pro
GGG
[ENA]
¡û
>PHG181004105
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
49193
49267
+
Pro
GGG
[ENA]
¡û
>PHG181004130
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
54336
54410
+
Pro
GGG
[ENA]
¡û
>PHG181004151
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
49919
49993
+
Pro
GGG
[ENA]
¡û
>PHG181004174
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
50359
50433
+
Pro
GGG
[ENA]
¡û
>PHG14101655
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
48550
48624
+
Pro
GGG
[ENA]
¡û
>PHG14101697
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
49400
49474
+
Pro
GGG
[ENA]
¡û
>PHG14101718
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
48587
48661
+
Pro
GGG
[ENA]
¡û
>PHG14101739
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
49875
49949
+
Pro
GGG
[ENA]
¡û
>PHG14101814
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
157938
157864
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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