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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55005 (4 seq.)
>PHG14600169
M35988
Myoviridae
Escherichia virus T4 GT7 (M35988)
1
122
+
Sup
TTA
[ENA]
¡û
>PHG14600170
M35989
Myoviridae
Escherichia virus T4 GT7 (M35989)
1
121
+
Sup
TTA
[ENA]
¡û
>PHG14600171
X14372
Myoviridae
Escherichia virus T4 (X14372)
1
121
+
Sup
TTA
[ENA]
¡û
>PHG14600172
X14373
Myoviridae
Escherichia virus T4 (X14373)
1
122
+
Sup
TTA
[ENA]
¡û
Identical group No.58394 (2 seq.)
>PHG14600168
M35987
Myoviridae
Escherichia virus T4 GT7 (M35987)
1
122
+
Sup
TTA
[ENA]
¡û
>PHG14600173
X14374
Myoviridae
Escherichia virus T4 (X14374)
1
122
+
Sup
TTA
[ENA]
¡û
Identical group No.78689 (1 seq.)
>PHG0300128
X14370
Myoviridae
Escherichia virus T4 (X14370)
1
86
+
Sup
TTA
[ENA]
¡û
Identical group No.81262 (1 seq.)
>PHG0100647
X14371
Myoviridae
Escherichia virus T4 (X14371)
1
86
+
Sup
TTA
[ENA]
¡û
Identical group No.269318 (1 seq.)
>PHG181001197
KR052482
Myoviridae
Sinorhizobium phage phiN3 (KR052482)
106988
107065
+
STOP
TTA
[ENA]
¡û
Identical group No.592224 (3 seq.)
>PHG181001186
KR052480
Myoviridae
Sinorhizobium phage phiM7 (KR052480)
104260
104335
+
STOP
TTA
[ENA]
¡û
>PHG181001192
KR052481
Myoviridae
Sinorhizobium phage phiM19 (KR052481)
104363
104438
+
STOP
TTA
[ENA]
¡û
>PHG14102568
KF381361
Myoviridae
Sinorhizobium phage phiM12 Sarco S13 (KF381361)
106714
106789
+
Sup
TTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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