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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59225 (5 seq.)
>A172000034
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
422713
422629
-
Leu
AAG
-
¡û
>A172000047
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1312655
1312571
-
Leu
AAG
-
¡û
>W141000081
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
45464
45380
-
Leu
AAG
[ENA]
¡û
>WENV077088
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
45464
45377
-
Leu
AAG
[ENA]
>W1620000001
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
186205
186121
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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