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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183726624
PJTO01000033
403836
Alphaproteobacteria
>WENV183726685
PJTO01000066
399340
Alphaproteobacteria
GTT
Asn
>WENV183726698
PJTO01000079
337513
Alphaproteobacteria
TGT
Thr
>WENV183726705
PJTO01000082
228484
Alphaproteobacteria
CCG
Arg
>WENV183726723
PJTO01000106
29655
Alphaproteobacteria
TGA
Ser
>WENV183726761
PJTO01000134
404592
Alphaproteobacteria
GGT
Thr
>WENV183726784
PJTO01000169
490723
Alphaproteobacteria
CTG
Gln
>WENV183726917
PJTO01000558
106524
Alphaproteobacteria
GTA
Tyr
>WENV183726920
PJTO01000579
282748
Alphaproteobacteria
CGT
Thr
>WENV183726950
PJTO01000822
284697
Alphaproteobacteria
GAA
Phe
>WENV183726959
PJTO01000883
282749
Alphaproteobacteria
CGC
Ala
>WENV183726978
PJTO01001167
400945
Alphaproteobacteria
GCC
Gly
>WENV183727005
PJTO01001622
282977
Alphaproteobacteria
CAT
Met
>WENV183727011
PJTO01001729
77010
Alphaproteobacteria
GAG
Leu
>WENV183727014
PJTO01001806
400258
Alphaproteobacteria
>WENV183727016
PJTO01001868
480900
Alphaproteobacteria
GCA
Cys
>WENV183727037
PJTO01002158
282749
Alphaproteobacteria
CGC
Ala
>WENV183727040
PJTO01002289
399238
Alphaproteobacteria
CGT
Thr
>WENV183727045
PJTO01002633
178576
Alphaproteobacteria
ACG
Arg
>WENV183727055
PJTO01002941
147858
Alphaproteobacteria
TAG
Leu
>WENV183727057
PJTO01003016
233665
Alphaproteobacteria
CCT
Arg
>WENV183727073
PJTO01003596
283320
Alphaproteobacteria
>WENV183727090
PJTO01004308
281231
Alphaproteobacteria
GTG
His
>WENV183727092
PJTO01004326
176633
Alphaproteobacteria
GAT
Ile
>WENV183727094
PJTO01004369
73735
Alphaproteobacteria
CAG
Leu
>WENV183727110
PJTO01005092
29874
Alphaproteobacteria
TGA
Ser
>WENV183727111
PJTO01005274
285028
Alphaproteobacteria
CTT
Lys
>WENV183727114
PJTO01005455
20267
Alphaproteobacteria
GGA
Ser
>WENV183727130
PJTO01006085
480418
Alphaproteobacteria
GCA
Cys
>WENV183727134
PJTO01006326
84860
Alphaproteobacteria
CAG
Leu
>WENV183727150
PJTO01007453
304844
Alphaproteobacteria
TAC
Val
>WENV183727154
PJTO01007923
155778
Alphaproteobacteria
TGG
Pro
>WENV183727155
PJTO01007923
176637
Alphaproteobacteria
TCT
Arg
>WENV183727169
PJTO01009696
399340
Alphaproteobacteria
GTT
Asn
>WENV183727181
PJTO01010495
179858
Alphaproteobacteria
TCT
Arg
>WENV183727183
PJTO01010567
119323
Alphaproteobacteria
CAA
Leu
>WENV183727186
PJTO01010868
99915
Alphaproteobacteria
GTA
Tyr
>WENV183727189
PJTO01011103
34617
Alphaproteobacteria
GGA
Ser
>WENV183727215
PJTO01014484
280784
Alphaproteobacteria
TGC
Ala
>WENV183727223
PJTO01015314
176634
Alphaproteobacteria
CGG
Pro
>WENV183727231
PJTO01016244
186414
Alphaproteobacteria
CAT
Met
>WENV183727250
PJTO01017630
284764
Alphaproteobacteria
CAT
Met
>WENV183727251
PJTO01017675
176233
Alphaproteobacteria
>WENV183727272
PJTO01020627
284374
Alphaproteobacteria
TTT
Lys
>WENV183727278
PJTO01021887
401056
Alphaproteobacteria
TTC
Glu
>WENV183727281
PJTO01022265
399210
Alphaproteobacteria
CAT
Met
>WENV183727301
PJTO01024891
178369
Alphaproteobacteria
CGG
Pro
>WENV183727303
PJTO01025037
176635
Alphaproteobacteria
CCT
Arg
>WENV183727348
PJTO01032424
176804
Alphaproteobacteria
TGG
Pro
>WENV183727352
PJTO01032695
480507
Alphaproteobacteria
GCA
Cys
>WENV183727356
PJTO01033365
73747
Alphaproteobacteria
CAG
Leu
>WENV183727359
PJTO01033798
399239
Alphaproteobacteria
CAC
Val
>WENV183727367
PJTO01034736
404182
Alphaproteobacteria
CAC
Val
>WENV183727384
PJTO01039323
481305
Alphaproteobacteria
CTG
Gln
>WENV183727396
PJTO01042333
281235
Alphaproteobacteria
CGC
Ala
>WENV183727419
PJTO01051381
282977
Alphaproteobacteria
CAT
Met
>WENV183727421
PJTO01051389
117880
Alphaproteobacteria
TAG
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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