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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1005875
SRR014589.4759
281679
Bacillota
TGT
Thr
>SRA1005876
SRR014589.4759
118184
Bacillota
GTA
Tyr
>SRA1005878
SRR014589.7061
283120
Bacillota
TTT
Lys
>SRA1005883
SRR014589.11546
178379
Bacillota
GTC
Asp
>SRA1005885
SRR014589.12948
178379
Bacillota
GTC
Asp
>SRA1005892
SRR014589.21784
118184
Bacillota
GTA
Tyr
>SRA1005901
SRR014589.31195
283120
Bacillota
TTT
Lys
>SRA1005902
SRR014589.33570
283120
Bacillota
TTT
Lys
>SRA1005911
SRR014589.41297
118184
Bacillota
GTA
Tyr
>SRA1005913
SRR014589.41574
118184
Bacillota
GTA
Tyr
>SRA1005917
SRR014589.42473
178379
Bacillota
GTC
Asp
>SRA1005921
SRR014589.46528
281679
Bacillota
TGT
Thr
>SRA1005922
SRR014589.46528
118184
Bacillota
GTA
Tyr
>SRA1005923
SRR014589.49598
281679
Bacillota
TGT
Thr
>SRA1005926
SRR014589.53829
13262
Bacillota
GCT
Ser
>SRA1005931
SRR014589.58943
178379
Bacillota
GTC
Asp
>SRA1005932
SRR014589.58943
281679
Bacillota
TGT
Thr
>SRA1005933
SRR014589.60360
283120
Bacillota
TTT
Lys
>SRA1005937
SRR014589.62685
283120
Bacillota
TTT
Lys
>SRA1005947
SRR014589.67187
118184
Bacillota
GTA
Tyr
>SRA1005961
SRR014589.75143
13262
Bacillota
GCT
Ser
>SRA1005962
SRR014589.75143
400003
Bacillota
TTC
Glu
>SRA1005967
SRR014589.81102
118184
Bacillota
GTA
Tyr
>SRA1005970
SRR014589.82196
13262
Bacillota
GCT
Ser
>SRA1005981
SRR014589.88914
13262
Bacillota
GCT
Ser
>SRA1005982
SRR014589.88914
400003
Bacillota
TTC
Glu
>SRA1005990
SRR014589.91859
13262
Bacillota
GCT
Ser
>SRA1005992
SRR014589.94124
118184
Bacillota
GTA
Tyr
>SRA1006017
SRR014589.115953
283120
Bacillota
TTT
Lys
>SRA1006018
SRR014589.116901
178379
Bacillota
GTC
Asp
>SRA1006019
SRR014589.116901
281679
Bacillota
TGT
Thr
>SRA1006035
SRR014589.130010
118184
Bacillota
GTA
Tyr
>SRA1006039
SRR014589.137569
281679
Bacillota
TGT
Thr
>SRA1006041
SRR014589.138116
281679
Bacillota
TGT
Thr
>SRA1006045
SRR014589.145081
178379
Bacillota
GTC
Asp
>SRA1006046
SRR014589.145081
281679
Bacillota
TGT
Thr
>SRA1006049
SRR014589.148767
283120
Bacillota
TTT
Lys
>SRA1006064
SRR014589.157602
283120
Bacillota
TTT
Lys
>SRA1006068
SRR014589.159752
13262
Bacillota
GCT
Ser
>SRA1006075
SRR014589.168928
13262
Bacillota
GCT
Ser
>SRA1006078
SRR014589.169626
178379
Bacillota
GTC
Asp
>SRA1006089
SRR014589.177647
178379
Bacillota
GTC
Asp
>SRA1006090
SRR014589.177647
281679
Bacillota
TGT
Thr
>SRA1006091
SRR014589.179032
118184
Bacillota
GTA
Tyr
>SRA1006096
SRR014589.182197
400003
Bacillota
TTC
Glu
>SRA1006100
SRR014589.188561
13262
Bacillota
GCT
Ser
>SRA1006101
SRR014589.188561
400003
Bacillota
TTC
Glu
>SRA1006103
SRR014589.190690
178379
Bacillota
GTC
Asp
>SRA1006105
SRR014589.195394
13262
Bacillota
GCT
Ser
>SRA1006110
SRR014589.203286
283120
Bacillota
TTT
Lys
>SRA1006123
SRR014589.222739
281679
Bacillota
TGT
Thr
>SRA1006124
SRR014589.222739
118184
Bacillota
GTA
Tyr
>SRA1006125
SRR014589.226733
118184
Bacillota
GTA
Tyr
>SRA1006128
SRR014589.234492
281679
Bacillota
TGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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