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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180440301
OBWV01000138
246260
Verrucomicrobiota
>WENV180440704
OBWV01001221
119661
Verrucomicrobiota
CAA
Leu
>WENV180440363
OBWV01000271
344841
Verrucomicrobiota
CAC
Val
>WENV180440364
OBWV01000277
60880
Verrucomicrobiota
CAG
Leu
>WENV180440321
OBWV01000171
170105
Verrucomicrobiota
CAT
Met
>WENV180440261
OBWV01000090
345115
Verrucomicrobiota
CAT
Met
>WENV180440260
OBWV01000090
246709
Verrucomicrobiota
CAT
Met
>WENV180440323
OBWV01000171
287733
Verrucomicrobiota
CCA
Trp
>WENV180440445
OBWV01000393
414625
Verrucomicrobiota
CCC
Gly
>WENV180440393
OBWV01000313
345142
Verrucomicrobiota
CCG
Arg
>WENV180440431
OBWV01000371
345110
Verrucomicrobiota
CCT
Arg
>WENV180440320
OBWV01000168
7274
Verrucomicrobiota
CGA
Ser
>WENV180440618
OBWV01000970
246687
Verrucomicrobiota
CGC
Ala
>WENV180440524
OBWV01000539
155268
Verrucomicrobiota
CGG
Pro
>WENV180440765
OBWV01001710
344842
Verrucomicrobiota
CGT
Thr
>WENV180440607
OBWV01000918
344845
Verrucomicrobiota
CTG
Gln
>WENV180440767
OBWV01001710
246677
Verrucomicrobiota
CTT
Lys
>WENV180440766
OBWV01001710
246677
Verrucomicrobiota
CTT
Lys
>WENV180440447
OBWV01000393
246728
Verrucomicrobiota
GAA
Phe
>WENV180440547
OBWV01000616
345133
Verrucomicrobiota
GAC
Val
>WENV180440573
OBWV01000718
368497
Verrucomicrobiota
GCC
Gly
>WENV180440257
OBWV01000090
368497
Verrucomicrobiota
GCC
Gly
>WENV180440302
OBWV01000138
7256
Verrucomicrobiota
GCT
Ser
>WENV180440668
OBWV01001079
155264
Verrucomicrobiota
GGG
Pro
>WENV180440322
OBWV01000171
344751
Verrucomicrobiota
GGT
Thr
>WENV180440877
OBWV01004308
82054
Verrucomicrobiota
GTA
Tyr
>WENV180440621
OBWV01000994
128202
Verrucomicrobiota
GTC
Asp
>WENV180440506
OBWV01000501
128202
Verrucomicrobiota
GTC
Asp
>WENV180440259
OBWV01000090
344839
Verrucomicrobiota
GTG
His
>WENV180440449
OBWV01000398
345124
Verrucomicrobiota
GTT
Asn
>WENV180440300
OBWV01000138
82056
Verrucomicrobiota
TAA
Leu
>WENV180440819
OBWV01002549
345119
Verrucomicrobiota
TAC
Val
>WENV180440543
OBWV01000603
97755
Verrucomicrobiota
TAG
Leu
>WENV180440500
OBWV01000484
155256
Verrucomicrobiota
TCT
Arg
>WENV180440611
OBWV01000946
46246
Verrucomicrobiota
TGA
Ser
>WENV180440448
OBWV01000393
154693
Verrucomicrobiota
TGG
Pro
>WENV180440753
OBWV01001610
345123
Verrucomicrobiota
TGT
Thr
>WENV180440396
OBWV01000322
246700
Verrucomicrobiota
TTC
Glu
>WENV180440258
OBWV01000090
246700
Verrucomicrobiota
TTC
Glu
>WENV180440226
OBWV01000072
345141
Verrucomicrobiota
TTG
Gln
>WENV180440469
OBWV01000438
246701
Verrucomicrobiota
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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