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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV182763753
OJRP01000085
406336
Verrucomicrobiota
CCT
Arg
>WENV182763772
OJRP01000096
229220
Verrucomicrobiota
CAT
Met
>WENV182763776
OJRP01000107
406350
Verrucomicrobiota
TGT
Thr
>WENV182763777
OJRP01000107
293079
Verrucomicrobiota
CGC
Ala
>WENV182763778
OJRP01000109
157427
Verrucomicrobiota
GTC
Asp
>WENV182763779
OJRP01000109
406044
Verrucomicrobiota
CTG
Gln
>WENV182763783
OJRP01000113
8960
Verrucomicrobiota
CGA
Ser
>WENV182763804
OJRP01000147
406351
Verrucomicrobiota
GTT
Asn
>WENV182763806
OJRP01000151
148006
Verrucomicrobiota
CAA
Leu
>WENV182763818
OJRP01000195
406369
Verrucomicrobiota
CCG
Arg
>WENV182763831
OJRP01000210
406039
Verrucomicrobiota
CAC
Val
>WENV182763833
OJRP01000218
406040
Verrucomicrobiota
CGT
Thr
>WENV182763834
OJRP01000218
293069
Verrucomicrobiota
CTT
Lys
>WENV182763835
OJRP01000218
293069
Verrucomicrobiota
CTT
Lys
>WENV182763836
OJRP01000218
187561
Verrucomicrobiota
CGG
Pro
>WENV182763848
OJRP01000239
298263
Verrucomicrobiota
TTC
Glu
>WENV182763879
OJRP01000290
405940
Verrucomicrobiota
GGT
Thr
>WENV182763882
OJRP01000301
293125
Verrucomicrobiota
GAA
Phe
>WENV182763883
OJRP01000301
186928
Verrucomicrobiota
TGG
Pro
>WENV182763888
OJRP01000317
101461
Verrucomicrobiota
GTA
Tyr
>WENV182763890
OJRP01000319
101463
Verrucomicrobiota
TAA
Leu
>WENV182763891
OJRP01000319
292636
Verrucomicrobiota
>WENV182763892
OJRP01000319
8938
Verrucomicrobiota
GCT
Ser
>WENV182763898
OJRP01000343
120352
Verrucomicrobiota
TAG
Leu
>WENV182763931
OJRP01000422
293095
Verrucomicrobiota
TTT
Lys
>WENV182763952
OJRP01000484
75458
Verrucomicrobiota
CAG
Leu
>WENV182763967
OJRP01000617
303305
Verrucomicrobiota
GGC
Ala
>WENV182763971
OJRP01000629
406342
Verrucomicrobiota
CAT
Met
>WENV182763974
OJRP01000650
187556
Verrucomicrobiota
GGG
Pro
>WENV182763985
OJRP01000763
157427
Verrucomicrobiota
GTC
Asp
>WENV182763994
OJRP01000807
21159
Verrucomicrobiota
GGA
Ser
>WENV182763997
OJRP01000825
101600
Verrucomicrobiota
AAG
Leu
>WENV182763998
OJRP01000834
406368
Verrucomicrobiota
TTG
Gln
>WENV182764003
OJRP01000911
489412
Verrucomicrobiota
TCC
Gly
>WENV182764004
OJRP01000911
483642
Verrucomicrobiota
CCC
Gly
>WENV182764005
OJRP01000917
57652
Verrucomicrobiota
TGA
Ser
>WENV182764074
OJRP01001575
187548
Verrucomicrobiota
TCT
Arg
>WENV182764125
OJRP01002496
406360
Verrucomicrobiota
GAC
Val
>WENV182764165
OJRP01003297
406037
Verrucomicrobiota
GTG
His
>WENV182764166
OJRP01003297
293105
Verrucomicrobiota
CAT
Met
>WENV182764231
OJRP01005214
406346
Verrucomicrobiota
TAC
Val
>WENV182764253
OJRP01006000
405901
Verrucomicrobiota
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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