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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183242421
OLRC01000030
119661
Verrucomicrobiota
CAA
Leu
>WENV183242653
OLRC01000605
155256
Verrucomicrobiota
TCT
Arg
>WENV183242376
OLRC01000001
246701
Verrucomicrobiota
TTT
Lys
>WENV183242397
OLRC01000016
345141
Verrucomicrobiota
TTG
Gln
>WENV183242773
OLRC01001229
345133
Verrucomicrobiota
GAC
Val
>WENV183242393
OLRC01000014
82054
Verrucomicrobiota
GTA
Tyr
>WENV183242404
OLRC01000020
246677
Verrucomicrobiota
CTT
Lys
>WENV183242403
OLRC01000020
246677
Verrucomicrobiota
CTT
Lys
>WENV183242476
OLRC01000107
344844
Verrucomicrobiota
GCA
Cys
>WENV183242556
OLRC01000287
155264
Verrucomicrobiota
GGG
Pro
>WENV183242398
OLRC01000016
344845
Verrucomicrobiota
CTG
Gln
>WENV183242445
OLRC01000060
128202
Verrucomicrobiota
GTC
Asp
>WENV183242399
OLRC01000016
128202
Verrucomicrobiota
GTC
Asp
>WENV183242447
OLRC01000067
414625
Verrucomicrobiota
CCC
Gly
>WENV183242422
OLRC01000031
46246
Verrucomicrobiota
TGA
Ser
>WENV183242377
OLRC01000002
97755
Verrucomicrobiota
TAG
Leu
>WENV183242715
OLRC01000939
246700
Verrucomicrobiota
TTC
Glu
>WENV183242477
OLRC01000107
246700
Verrucomicrobiota
TTC
Glu
>WENV183242570
OLRC01000320
246687
Verrucomicrobiota
CGC
Ala
>WENV183242446
OLRC01000067
419909
Verrucomicrobiota
TCC
Gly
>WENV183242389
OLRC01000011
344841
Verrucomicrobiota
CAC
Val
>WENV183242591
OLRC01000420
60880
Verrucomicrobiota
CAG
Leu
>WENV183242417
OLRC01000030
82056
Verrucomicrobiota
TAA
Leu
>WENV183242402
OLRC01000020
344842
Verrucomicrobiota
CGT
Thr
>WENV183242441
OLRC01000042
170105
Verrucomicrobiota
CAT
Met
>WENV183242429
OLRC01000033
287733
Verrucomicrobiota
CCA
Trp
>WENV183242478
OLRC01000107
345123
Verrucomicrobiota
TGT
Thr
>WENV183242378
OLRC01000002
345110
Verrucomicrobiota
CCT
Arg
>WENV183242716
OLRC01000939
344839
Verrucomicrobiota
GTG
His
>WENV183242432
OLRC01000036
7274
Verrucomicrobiota
CGA
Ser
>WENV183242418
OLRC01000030
246260
Verrucomicrobiota
>WENV183242401
OLRC01000020
155268
Verrucomicrobiota
CGG
Pro
>WENV183242712
OLRC01000923
82181
Verrucomicrobiota
AAG
Leu
>WENV183242690
OLRC01000776
246728
Verrucomicrobiota
GAA
Phe
>WENV183242419
OLRC01000030
7256
Verrucomicrobiota
GCT
Ser
>WENV183242424
OLRC01000031
345115
Verrucomicrobiota
CAT
Met
>WENV183242405
OLRC01000021
345119
Verrucomicrobiota
TAC
Val
>WENV183242392
OLRC01000014
345124
Verrucomicrobiota
GTT
Asn
>WENV183242444
OLRC01000060
17023
Verrucomicrobiota
GGA
Ser
>WENV183242787
OLRC01001349
368497
Verrucomicrobiota
GCC
Gly
>WENV183242423
OLRC01000031
368497
Verrucomicrobiota
GCC
Gly
>WENV183242448
OLRC01000067
345142
Verrucomicrobiota
CCG
Arg
>WENV183242717
OLRC01000939
246709
Verrucomicrobiota
CAT
Met
>WENV183242691
OLRC01000776
154693
Verrucomicrobiota
TGG
Pro
>WENV183242428
OLRC01000033
344751
Verrucomicrobiota
GGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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