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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1008131
SRR020490.218410
277354
Cyanobacteriota
GGG
Pro
>SRA1008385
SRR020490.336811
277354
Cyanobacteriota
GGG
Pro
>SRA1007848
SRR020490.93012
660981
Cyanobacteriota
TTT
Lys
>SRA1007926
SRR020490.124171
660981
Cyanobacteriota
TTT
Lys
>SRA1007984
SRR020490.151482
660981
Cyanobacteriota
TTT
Lys
>SRA1008379
SRR020490.333845
660981
Cyanobacteriota
TTT
Lys
>SRA1008409
SRR020490.347244
660981
Cyanobacteriota
TTT
Lys
>SRA1008510
SRR020490.402493
660981
Cyanobacteriota
TTT
Lys
>SRA1008610
SRR020490.431392
660981
Cyanobacteriota
TTT
Lys
>SRA1008653
SRR020490.446223
660981
Cyanobacteriota
TTT
Lys
>SRA1008085
SRR020490.195231
654266
Cyanobacteriota
GAC
Val
>SRA1008609
SRR020490.430841
654266
Cyanobacteriota
GAC
Val
>SRA1008035
SRR020490.178967
654134
Cyanobacteriota
GTT
Asn
>SRA1008112
SRR020490.208007
654134
Cyanobacteriota
GTT
Asn
>SRA1007925
SRR020490.123968
657285
Cyanobacteriota
TTG
Gln
>SRA1008183
SRR020490.242698
657285
Cyanobacteriota
TTG
Gln
>SRA1008232
SRR020490.270733
657285
Cyanobacteriota
TTG
Gln
>SRA1008280
SRR020490.294107
657285
Cyanobacteriota
TTG
Gln
>SRA1008541
SRR020490.411544
657285
Cyanobacteriota
TTG
Gln
>SRA1008657
SRR020490.447087
657285
Cyanobacteriota
TTG
Gln
>SRA1008691
SRR020490.460549
657285
Cyanobacteriota
TTG
Gln
>SRA1008165
SRR020490.231752
181218
Cyanobacteriota
GTA
Tyr
>SRA1007741
SRR020490.36159
20153
Cyanobacteriota
GCT
Ser
>SRA1008113
SRR020490.208290
20153
Cyanobacteriota
GCT
Ser
>SRA1008708
SRR020490.465804
20153
Cyanobacteriota
GCT
Ser
>SRA1008056
SRR020490.184887
46559
Cyanobacteriota
GGA
Ser
>SRA1007693
SRR020490.6230
454022
Cyanobacteriota
TGC
Ala
>SRA1007872
SRR020490.103015
454022
Cyanobacteriota
TGC
Ala
>SRA1007941
SRR020490.132484
454022
Cyanobacteriota
TGC
Ala
>SRA1008043
SRR020490.181540
454022
Cyanobacteriota
TGC
Ala
>SRA1008346
SRR020490.321025
454022
Cyanobacteriota
TGC
Ala
>SRA1008421
SRR020490.351198
454022
Cyanobacteriota
TGC
Ala
>SRA1008447
SRR020490.361954
779735
Cyanobacteriota
TCC
Gly
>SRA1008162
SRR020490.229848
661714
Cyanobacteriota
GAC
Val
>SRA1008172
SRR020490.234844
661714
Cyanobacteriota
GAC
Val
>SRA1007756
SRR020490.42090
657291
Cyanobacteriota
GGT
Thr
>SRA1007792
SRR020490.62074
657291
Cyanobacteriota
GGT
Thr
>SRA1007828
SRR020490.82390
657291
Cyanobacteriota
GGT
Thr
>SRA1007858
SRR020490.96187
657291
Cyanobacteriota
GGT
Thr
>SRA1007937
SRR020490.130223
657291
Cyanobacteriota
GGT
Thr
>SRA1008166
SRR020490.231752
657291
Cyanobacteriota
GGT
Thr
>SRA1008314
SRR020490.309664
657291
Cyanobacteriota
GGT
Thr
>SRA1008529
SRR020490.408472
657291
Cyanobacteriota
GGT
Thr
>SRA1007836
SRR020490.87379
455176
Cyanobacteriota
GTG
His
>SRA1008366
SRR020490.328443
455176
Cyanobacteriota
GTG
His
>SRA1008544
SRR020490.412444
455176
Cyanobacteriota
GTG
His
>SRA1007852
SRR020490.94493
73049
Cyanobacteriota
TAA
Leu
>SRA1007793
SRR020490.62235
46524
Cyanobacteriota
TGA
Ser
>SRA1007877
SRR020490.106057
46524
Cyanobacteriota
TGA
Ser
>SRA1008360
SRR020490.326349
466527
Cyanobacteriota
GTG
His
>SRA1008580
SRR020490.422524
181217
Cyanobacteriota
CAA
Leu
>SRA1007977
SRR020490.148062
458795
Cyanobacteriota
GGC
Ala
>SRA1008551
SRR020490.414467
458795
Cyanobacteriota
GGC
Ala
>SRA1008596
SRR020490.426627
458795
Cyanobacteriota
GGC
Ala
>SRA1007853
SRR020490.94696
465391
Cyanobacteriota
CCA
Trp
>SRA1008027
SRR020490.173355
465391
Cyanobacteriota
CCA
Trp
>SRA1008298
SRR020490.303635
465391
Cyanobacteriota
CCA
Trp
>SRA1008408
SRR020490.346705
465391
Cyanobacteriota
CCA
Trp
>SRA1008448
SRR020490.362216
465391
Cyanobacteriota
CCA
Trp
>SRA1008538
SRR020490.411071
465391
Cyanobacteriota
CCA
Trp
>SRA1008623
SRR020490.437100
465391
Cyanobacteriota
CCA
Trp
>SRA1008681
SRR020490.457506
465391
Cyanobacteriota
CCA
Trp
>SRA1007991
SRR020490.154506
654126
Cyanobacteriota
GTT
Asn
>SRA1008033
SRR020490.178175
654126
Cyanobacteriota
GTT
Asn
>SRA1008044
SRR020490.181634
654126
Cyanobacteriota
GTT
Asn
>SRA1008321
SRR020490.311475
654126
Cyanobacteriota
GTT
Asn
>SRA1008374
SRR020490.330772
654126
Cyanobacteriota
GTT
Asn
>SRA1007814
SRR020490.76994
283475
Cyanobacteriota
ACG
Arg
>SRA1007847
SRR020490.92869
283475
Cyanobacteriota
ACG
Arg
>SRA1007886
SRR020490.108793
283475
Cyanobacteriota
ACG
Arg
>SRA1008134
SRR020490.218953
283475
Cyanobacteriota
ACG
Arg
>SRA1008357
SRR020490.325494
283475
Cyanobacteriota
ACG
Arg
>SRA1007743
SRR020490.36364
272148
Cyanobacteriota
CAT
Met
>SRA1008330
SRR020490.315072
272148
Cyanobacteriota
CAT
Met
>SRA1008451
SRR020490.364020
272148
Cyanobacteriota
CAT
Met
>SRA1008471
SRR020490.378859
272148
Cyanobacteriota
CAT
Met
>SRA1007716
SRR020490.19960
271967
Cyanobacteriota
GTC
Asp
>SRA1007733
SRR020490.33570
271967
Cyanobacteriota
GTC
Asp
>SRA1007738
SRR020490.34763
271967
Cyanobacteriota
GTC
Asp
>SRA1007801
SRR020490.69868
271967
Cyanobacteriota
GTC
Asp
>SRA1008068
SRR020490.188915
271967
Cyanobacteriota
GTC
Asp
>SRA1008229
SRR020490.269532
271967
Cyanobacteriota
GTC
Asp
>SRA1008272
SRR020490.289758
271967
Cyanobacteriota
GTC
Asp
>SRA1008423
SRR020490.352340
271967
Cyanobacteriota
GTC
Asp
>SRA1008464
SRR020490.375737
271967
Cyanobacteriota
GTC
Asp
>SRA1008506
SRR020490.401033
271967
Cyanobacteriota
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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