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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170059651
CDZH01056015
370534
Verrucomicrobiota
TGT
Thr
>WENV170059157
CDZH01036581
370537
Verrucomicrobiota
CCG
Arg
>WENV170059610
CDZH01055360
290976
Verrucomicrobiota
GGC
Ala
>WENV170060124
CDZH01075237
88984
Verrucomicrobiota
GTA
Tyr
>WENV170059166
CDZH01036581
88983
Verrucomicrobiota
TAA
Leu
>WENV170058369
CDZH01005359
370530
Verrucomicrobiota
TAC
Val
>WENV170058367
CDZH01005359
370526
Verrucomicrobiota
CTG
Gln
>WENV170060309
CDZH01082676
50031
Verrucomicrobiota
TGA
Ser
>WENV170059173
CDZH01036590
8030
Verrucomicrobiota
CGA
Ser
>WENV170059703
CDZH01057976
370525
Verrucomicrobiota
TTG
Gln
>WENV170059211
CDZH01037999
65262
Verrucomicrobiota
CAG
Leu
>WENV170059168
CDZH01036581
8029
Verrucomicrobiota
GCT
Ser
>WENV170058370
CDZH01005359
139132
Verrucomicrobiota
GTC
Asp
>WENV170059158
CDZH01036581
139132
Verrucomicrobiota
GTC
Asp
>WENV170059657
CDZH01056017
370538
Verrucomicrobiota
CGT
Thr
>WENV170060313
CDZH01082676
260061
Verrucomicrobiota
>WENV170059164
CDZH01036581
161141
Verrucomicrobiota
TGG
Pro
>WENV170059167
CDZH01036581
260057
Verrucomicrobiota
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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