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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170176176
CEOS01048577
159828
Gammaproteobacteria
CAC
Val
>WENV170176416
CEOS01073997
105430
Gammaproteobacteria
GTA
Tyr
>WENV170176444
CEOS01077294
160668
Gammaproteobacteria
CAT
Met
>WENV170175743
CEOS01003536
305458
Gammaproteobacteria
TAC
Val
>WENV170176947
CEOS01141254
271381
Gammaproteobacteria
GGC
Ala
>WENV170176498
CEOS01084971
125783
Gammaproteobacteria
GTA
Tyr
>WENV170176996
CEOS01145117
260947
Gammaproteobacteria
TTG
Gln
>WENV170176572
CEOS01094222
161514
Gammaproteobacteria
TCT
Arg
>WENV170176481
CEOS01082600
20140
Gammaproteobacteria
>WENV170176671
CEOS01108579
159505
Gammaproteobacteria
CGG
Pro
>WENV170175762
CEOS01005007
259140
Gammaproteobacteria
TGC
Ala
>WENV170176255
CEOS01055543
226531
Gammaproteobacteria
CGG
Pro
>WENV170176741
CEOS01117701
207358
Gammaproteobacteria
CCG
Arg
>WENV170176835
CEOS01128496
189269
Gammaproteobacteria
CGG
Pro
>WENV170177184
CEOS01217504
159512
Gammaproteobacteria
GGG
Pro
>WENV170176489
CEOS01083723
18730
Gammaproteobacteria
GCT
Ser
>WENV170176494
CEOS01084577
105812
Gammaproteobacteria
GTA
Tyr
>WENV170176500
CEOS01084971
369546
Gammaproteobacteria
GGT
Thr
>WENV170176487
CEOS01083227
237974
Gammaproteobacteria
TCT
Arg
>WENV170176857
CEOS01132205
261154
Gammaproteobacteria
TGC
Ala
>WENV170176760
CEOS01120748
479393
Gammaproteobacteria
GCA
Cys
>WENV170176438
CEOS01076381
265381
Gammaproteobacteria
GTT
Asn
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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