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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170182359
CEOX01171836
160199
Alphaproteobacteria
GGG
Pro
>WENV170182149
CEOX01074627
160319
Alphaproteobacteria
TCT
Arg
>WENV170181722
CEOX01033401
396582
Alphaproteobacteria
GAC
Val
>WENV170182185
CEOX01090894
396582
Alphaproteobacteria
GAC
Val
>WENV170182259
CEOX01128683
218844
Alphaproteobacteria
CCT
Arg
>WENV170182067
CEOX01064903
166628
Alphaproteobacteria
CAT
Met
>WENV170182026
CEOX01060918
259585
Alphaproteobacteria
CCA
Trp
>WENV170181764
CEOX01037587
393349
Alphaproteobacteria
GGT
Thr
>WENV170181749
CEOX01035779
448267
Alphaproteobacteria
GCA
Cys
>WENV170181636
CEOX01023669
406362
Alphaproteobacteria
GAA
Phe
>WENV170181825
CEOX01043772
278841
Alphaproteobacteria
TTT
Lys
>WENV170182165
CEOX01080995
160197
Alphaproteobacteria
GTC
Asp
>WENV170181613
CEOX01021252
377113
Alphaproteobacteria
GAC
Val
>WENV170181590
CEOX01019084
205335
Alphaproteobacteria
GGG
Pro
>WENV170181773
CEOX01038296
163875
Alphaproteobacteria
ACG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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