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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170426654
CEUQ01102230
179198
Alphaproteobacteria
GTC
Asp
>WENV170428239
CEUQ01388318
170813
Alphaproteobacteria
CCT
Arg
>WENV170427001
CEUQ01135988
448621
Alphaproteobacteria
GCA
Cys
>WENV170428172
CEUQ01362403
264419
Alphaproteobacteria
TTT
Lys
>WENV170426844
CEUQ01121330
166599
Alphaproteobacteria
CAT
Met
>WENV170427293
CEUQ01163886
124623
Alphaproteobacteria
>WENV170426297
CEUQ01071072
50023
Alphaproteobacteria
GGA
Ser
>WENV170426807
CEUQ01117935
160254
Alphaproteobacteria
CCA
Trp
>WENV170427003
CEUQ01136461
302408
Alphaproteobacteria
GAA
Phe
>WENV170425640
CEUQ01011870
166369
Alphaproteobacteria
>WENV170426345
CEUQ01075032
177689
Alphaproteobacteria
CAT
Met
>WENV170426833
CEUQ01119991
66074
Alphaproteobacteria
CAG
Leu
>WENV170427550
CEUQ01181252
66074
Alphaproteobacteria
CAG
Leu
>WENV170427763
CEUQ01188930
66074
Alphaproteobacteria
CAG
Leu
>WENV170425956
CEUQ01038363
449739
Alphaproteobacteria
GCA
Cys
>WENV170427338
CEUQ01167306
302791
Alphaproteobacteria
CGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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