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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170556972
CXWL01016945
237158
Alphaproteobacteria
ACG
Arg
>WENV170557242
CXWL01021910
264987
Alphaproteobacteria
CCA
Trp
>WENV170556910
CXWL01016012
369662
Alphaproteobacteria
GGT
Thr
>WENV170557291
CXWL01023153
271426
Alphaproteobacteria
CGT
Thr
>WENV170558834
CXWL01094355
391204
Alphaproteobacteria
TGT
Thr
>WENV170555433
CXWL01000586
122389
Alphaproteobacteria
TAG
Leu
>WENV170555695
CXWL01001801
122389
Alphaproteobacteria
TAG
Leu
>WENV170559270
CXWL01117077
178360
Alphaproteobacteria
CCT
Arg
>WENV170555936
CXWL01003298
108846
Alphaproteobacteria
CAA
Leu
>WENV170557512
CXWL01028723
396582
Alphaproteobacteria
GAC
Val
>WENV170555785
CXWL01002153
452486
Alphaproteobacteria
GCA
Cys
>WENV170558069
CXWL01048453
452486
Alphaproteobacteria
GCA
Cys
>WENV170556228
CXWL01005847
268994
Alphaproteobacteria
CCA
Trp
>WENV170559769
CXWL01148200
65349
Alphaproteobacteria
GTA
Tyr
>WENV170555318
CXWL01000128
66417
Alphaproteobacteria
GAG
Leu
>WENV170555407
CXWL01000501
66417
Alphaproteobacteria
GAG
Leu
>WENV170556411
CXWL01008249
66417
Alphaproteobacteria
GAG
Leu
>WENV170558556
CXWL01078063
259563
Alphaproteobacteria
GGC
Ala
>WENV170555601
CXWL01001321
383286
Alphaproteobacteria
GGT
Thr
>WENV170558157
CXWL01054065
374953
Alphaproteobacteria
CAT
Met
>WENV170558033
CXWL01046998
184235
Alphaproteobacteria
GTC
Asp
>WENV170555986
CXWL01003700
451324
Alphaproteobacteria
CCC
Gly
>WENV170558070
CXWL01048459
7963
Alphaproteobacteria
GCT
Ser
>WENV170555944
CXWL01003322
177420
Alphaproteobacteria
TCT
Arg
>WENV170555347
CXWL01000256
109161
Alphaproteobacteria
GAG
Leu
>WENV170556293
CXWL01006733
109161
Alphaproteobacteria
GAG
Leu
>WENV170555401
CXWL01000479
382337
Alphaproteobacteria
TAC
Val
>WENV170555781
CXWL01002153
382337
Alphaproteobacteria
TAC
Val
>WENV170557299
CXWL01023371
382337
Alphaproteobacteria
TAC
Val
>WENV170558526
CXWL01076051
376060
Alphaproteobacteria
CGT
Thr
>WENV170556778
CXWL01013546
27695
Alphaproteobacteria
TGA
Ser
>WENV170558765
CXWL01088894
461210
Alphaproteobacteria
CTG
Gln
>WENV170555458
CXWL01000652
179904
Alphaproteobacteria
CGG
Pro
>WENV170556501
CXWL01009583
266672
Alphaproteobacteria
>WENV170556664
CXWL01011822
266672
Alphaproteobacteria
>WENV170555513
CXWL01000862
268441
Alphaproteobacteria
TGT
Thr
>WENV170555790
CXWL01002157
161642
Alphaproteobacteria
CAT
Met
>WENV170557882
CXWL01041299
318107
Alphaproteobacteria
TAC
Val
>WENV170555818
CXWL01002438
230954
Alphaproteobacteria
CCT
Arg
>WENV170558143
CXWL01053026
403408
Alphaproteobacteria
TTG
Gln
>WENV170555323
CXWL01000149
169247
Alphaproteobacteria
CCT
Arg
>WENV170556086
CXWL01004693
308418
Alphaproteobacteria
TTT
Lys
>WENV170557407
CXWL01026081
308418
Alphaproteobacteria
TTT
Lys
>WENV170556462
CXWL01009061
282381
Alphaproteobacteria
CCA
Trp
>WENV170559178
CXWL01112878
167153
Alphaproteobacteria
GGG
Pro
>WENV170555377
CXWL01000382
74887
Alphaproteobacteria
CAG
Leu
>WENV170556338
CXWL01007332
74887
Alphaproteobacteria
CAG
Leu
>WENV170557070
CXWL01018248
90549
Alphaproteobacteria
TAA
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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