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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180020031
FTCV01000835
237158
Alphaproteobacteria
ACG
Arg
>WENV180020032
FTCV01000835
237158
Alphaproteobacteria
ACG
Arg
>WENV180020164
FTCV01002765
448712
Alphaproteobacteria
GCA
Cys
>WENV180020170
FTCV01002799
448712
Alphaproteobacteria
GCA
Cys
>WENV180020140
FTCV01002393
391204
Alphaproteobacteria
TGT
Thr
>WENV180020018
FTCV01000700
211733
Alphaproteobacteria
TCT
Arg
>WENV180020126
FTCV01002203
171628
Alphaproteobacteria
TAC
Val
>WENV180020085
FTCV01001616
258481
Alphaproteobacteria
>WENV180020048
FTCV01001067
116762
Alphaproteobacteria
CAA
Leu
>WENV180020158
FTCV01002649
396032
Alphaproteobacteria
TTG
Gln
>WENV180020110
FTCV01001929
162047
Alphaproteobacteria
CCT
Arg
>WENV180020096
FTCV01001805
295849
Alphaproteobacteria
CCA
Trp
>WENV180020129
FTCV01002231
159682
Alphaproteobacteria
TGG
Pro
>WENV180020136
FTCV01002314
27695
Alphaproteobacteria
TGA
Ser
>WENV180020038
FTCV01000871
173085
Alphaproteobacteria
GTG
His
>WENV180020130
FTCV01002257
371854
Alphaproteobacteria
GGT
Thr
>WENV180020151
FTCV01002504
11978
Alphaproteobacteria
GCT
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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