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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180026354
FTIT01002117
258481
Alphaproteobacteria
>WENV180026381
FTIT01019501
272697
Alphaproteobacteria
GAA
Phe
>WENV180026480
FTIT01511564
27368
Alphaproteobacteria
CGA
Ser
>WENV180026406
FTIT01066602
158626
Alphaproteobacteria
TCT
Arg
>WENV180026378
FTIT01012415
105152
Alphaproteobacteria
CAA
Leu
>WENV180026266
FTIT01000350
160463
Alphaproteobacteria
CGG
Pro
>WENV180026287
FTIT01000928
160463
Alphaproteobacteria
CGG
Pro
>WENV180026283
FTIT01000891
109016
Alphaproteobacteria
CAA
Leu
>WENV180026314
FTIT01001410
109016
Alphaproteobacteria
CAA
Leu
>WENV180026296
FTIT01001064
159678
Alphaproteobacteria
GTG
His
>WENV180026395
FTIT01037638
159678
Alphaproteobacteria
GTG
His
>WENV180026300
FTIT01001142
266672
Alphaproteobacteria
>WENV180026402
FTIT01056844
266672
Alphaproteobacteria
>WENV180026327
FTIT01001650
266921
Alphaproteobacteria
GGC
Ala
>WENV180026279
FTIT01000718
167153
Alphaproteobacteria
GGG
Pro
>WENV180026420
FTIT01132832
167153
Alphaproteobacteria
GGG
Pro
>WENV180026404
FTIT01063796
160042
Alphaproteobacteria
CAT
Met
>WENV180026312
FTIT01001372
302791
Alphaproteobacteria
CGT
Thr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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