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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180042165
LNFX01001456
119729
Gammaproteobacteria
TAG
Leu
>WENV180042179
LNFX01002340
376396
Gammaproteobacteria
TTG
Gln
>WENV180042177
LNFX01002340
161183
Gammaproteobacteria
CAT
Met
>WENV180042131
LNFX01000311
89137
Gammaproteobacteria
GAG
Leu
>WENV180042204
LNFX01004546
89137
Gammaproteobacteria
GAG
Leu
>WENV180042127
LNFX01000161
261088
Gammaproteobacteria
GGT
Thr
>WENV180042128
LNFX01000161
261089
Gammaproteobacteria
CCA
Trp
>WENV180042132
LNFX01000348
162311
Gammaproteobacteria
TCT
Arg
>WENV180042147
LNFX01000710
105912
Gammaproteobacteria
CAA
Leu
>WENV180042157
LNFX01001121
105912
Gammaproteobacteria
CAA
Leu
>WENV180042158
LNFX01001179
105912
Gammaproteobacteria
CAA
Leu
>WENV180042125
LNFX01000161
124803
Gammaproteobacteria
GTA
Tyr
>WENV180042138
LNFX01000440
261190
Gammaproteobacteria
CCT
Arg
>WENV180042140
LNFX01000494
261085
Gammaproteobacteria
TAC
Val
>WENV180042146
LNFX01000660
261085
Gammaproteobacteria
TAC
Val
>WENV180042164
LNFX01001444
261085
Gammaproteobacteria
TAC
Val
>WENV180042154
LNFX01001080
105913
Gammaproteobacteria
TAG
Leu
>WENV180042144
LNFX01000660
177216
Gammaproteobacteria
GGG
Pro
>WENV180042190
LNFX01003478
177216
Gammaproteobacteria
GGG
Pro
>WENV180042119
LNFX01000011
18620
Gammaproteobacteria
TGA
Ser
>WENV180042130
LNFX01000216
50137
Gammaproteobacteria
GGA
Ser
>WENV180042129
LNFX01000216
318955
Gammaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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