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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV180559766
OCKD01000103
160390
Bacillota
ACG
Arg
>WENV180559763
OCKD01000103
18450
Bacillota
GCT
Ser
>WENV180559765
OCKD01000103
18450
Bacillota
GCT
Ser
>WENV180559720
OCKD01000059
259252
Bacillota
TGT
Thr
>WENV180559819
OCKD01000224
259252
Bacillota
TGT
Thr
>WENV180559881
OCKD01001551
259252
Bacillota
TGT
Thr
>WENV180559700
OCKD01000043
160389
Bacillota
CAT
Met
>WENV180559775
OCKD01000116
383556
Bacillota
GTT
Asn
>WENV180559768
OCKD01000103
27313
Bacillota
GGA
Ser
>WENV180559762
OCKD01000103
19298
Bacillota
TGA
Ser
>WENV180559764
OCKD01000103
19298
Bacillota
TGA
Ser
>WENV180559862
OCKD01000539
377680
Bacillota
TTG
Gln
>WENV180559882
OCKD01001556
377680
Bacillota
TTG
Gln
>WENV180559575
OCKD01000002
370103
Bacillota
GCC
Gly
>WENV180559823
OCKD01000237
259255
Bacillota
TTT
Lys
>WENV180559824
OCKD01000238
259255
Bacillota
TTT
Lys
>WENV180559845
OCKD01000394
259255
Bacillota
TTT
Lys
>WENV180559863
OCKD01000539
259255
Bacillota
TTT
Lys
>WENV180559846
OCKD01000394
125076
Bacillota
TAG
Leu
>WENV180559851
OCKD01000431
260098
Bacillota
TGC
Ala
>WENV180559816
OCKD01000179
160392
Bacillota
TCG
Arg
>WENV180559796
OCKD01000145
12107
Bacillota
GCT
Ser
>WENV180559848
OCKD01000394
160391
Bacillota
TCT
Arg
>WENV180559878
OCKD01001541
160391
Bacillota
TCT
Arg
>WENV180559576
OCKD01000002
448594
Bacillota
TCC
Gly
>WENV180559815
OCKD01000179
448594
Bacillota
TCC
Gly
>WENV180559832
OCKD01000256
448594
Bacillota
TCC
Gly
>WENV180559847
OCKD01000394
448594
Bacillota
TCC
Gly
>WENV180559883
OCKD01001559
448594
Bacillota
TCC
Gly
>WENV180559625
OCKD01000018
386096
Bacillota
>WENV180559785
OCKD01000119
386096
Bacillota
>WENV180559786
OCKD01000119
258607
Bacillota
TAC
Val
>WENV180559821
OCKD01000224
258607
Bacillota
TAC
Val
>WENV180559856
OCKD01000441
258607
Bacillota
TAC
Val
>WENV180559578
OCKD01000002
65104
Bacillota
CAA
Leu
>WENV180559742
OCKD01000086
391151
Bacillota
GCC
Gly
>WENV180559814
OCKD01000179
391151
Bacillota
GCC
Gly
>WENV180559831
OCKD01000256
391151
Bacillota
GCC
Gly
>WENV180559721
OCKD01000059
88869
Bacillota
GTA
Tyr
>WENV180559820
OCKD01000224
88869
Bacillota
GTA
Tyr
>WENV180559855
OCKD01000441
88869
Bacillota
GTA
Tyr
>WENV180559861
OCKD01000539
260097
Bacillota
GTG
His
>WENV180559702
OCKD01000043
370101
Bacillota
GTT
Asn
>WENV180559822
OCKD01000225
370101
Bacillota
GTT
Asn
>WENV180559767
OCKD01000103
370102
Bacillota
CCT
Arg
>WENV180559626
OCKD01000018
41293
Bacillota
TAA
Leu
>WENV180559698
OCKD01000043
41293
Bacillota
TAA
Leu
>WENV180559701
OCKD01000043
41293
Bacillota
TAA
Leu
>WENV180559724
OCKD01000063
88870
Bacillota
GAG
Leu
>WENV180559722
OCKD01000059
270248
Bacillota
CCA
Trp
>WENV180559817
OCKD01000192
288774
Bacillota
CTT
Lys
>WENV180559833
OCKD01000256
288774
Bacillota
CTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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