This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
119 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1005112
SRR006907.37251
399907
Gammaproteobacteria
TTG
Gln
>SRA1005353
SRR006907.201460
257139
Gammaproteobacteria
TGT
Thr
>SRA1005198
SRR006907.97317
271866
Gammaproteobacteria
TTT
Lys
>SRA1005395
SRR006907.243859
271866
Gammaproteobacteria
TTT
Lys
>SRA1004431
SRR006906.29849
159179
Gammaproteobacteria
>SRA1004543
SRR006906.63840
159179
Gammaproteobacteria
>SRA1004594
SRR006906.79791
159179
Gammaproteobacteria
>SRA1004771
SRR006906.132046
159179
Gammaproteobacteria
>SRA1004791
SRR006906.137997
159179
Gammaproteobacteria
>SRA1004799
SRR006906.140728
159179
Gammaproteobacteria
>SRA1004641
SRR006906.93023
159182
Gammaproteobacteria
GGG
Pro
>SRA1004707
SRR006906.108967
159182
Gammaproteobacteria
GGG
Pro
>SRA1004443
SRR006906.31469
258063
Gammaproteobacteria
TAC
Val
>SRA1004552
SRR006906.66958
258063
Gammaproteobacteria
TAC
Val
>SRA1004784
SRR006906.136526
258063
Gammaproteobacteria
TAC
Val
>SRA1004832
SRR006906.155335
258063
Gammaproteobacteria
TAC
Val
>SRA1004881
SRR006906.169449
258063
Gammaproteobacteria
TAC
Val
>SRA1004945
SRR006906.192813
258063
Gammaproteobacteria
TAC
Val
>SRA1005003
SRR006906.219801
258063
Gammaproteobacteria
TAC
Val
>SRA1005037
SRR006906.235273
258063
Gammaproteobacteria
TAC
Val
>SRA1005047
SRR006906.239545
258063
Gammaproteobacteria
TAC
Val
>SRA1004393
SRR006906.18750
368881
Gammaproteobacteria
>SRA1004417
SRR006906.25744
368881
Gammaproteobacteria
>SRA1004606
SRR006906.82607
368881
Gammaproteobacteria
>SRA1004621
SRR006906.87489
368881
Gammaproteobacteria
>SRA1004777
SRR006906.134883
368881
Gammaproteobacteria
>SRA1004783
SRR006906.136336
368881
Gammaproteobacteria
>SRA1004860
SRR006906.164724
368881
Gammaproteobacteria
>SRA1004955
SRR006906.197527
368881
Gammaproteobacteria
>SRA1004656
SRR006906.95702
258062
Gammaproteobacteria
GTG
His
>SRA1004718
SRR006906.112193
258062
Gammaproteobacteria
GTG
His
>SRA1004750
SRR006906.123664
258062
Gammaproteobacteria
GTG
His
>SRA1004689
SRR006906.103014
212548
Gammaproteobacteria
CCG
Arg
>SRA1004916
SRR006906.184063
212548
Gammaproteobacteria
CCG
Arg
>SRA1005061
SRR006906.248500
212548
Gammaproteobacteria
CCG
Arg
>SRA1004659
SRR006906.96109
176936
Gammaproteobacteria
>SRA1004755
SRR006906.124788
369342
Gammaproteobacteria
TTG
Gln
>SRA1004802
SRR006906.142799
369342
Gammaproteobacteria
TTG
Gln
>SRA1004733
SRR006906.117921
391505
Gammaproteobacteria
TTG
Gln
>SRA1004787
SRR006906.137653
391505
Gammaproteobacteria
TTG
Gln
>SRA1004960
SRR006906.199131
391505
Gammaproteobacteria
TTG
Gln
>SRA1004570
SRR006906.71846
119500
Gammaproteobacteria
GTA
Tyr
>SRA1004889
SRR006906.173815
119500
Gammaproteobacteria
GTA
Tyr
>SRA1004546
SRR006906.64360
158314
Gammaproteobacteria
GAC
Val
>SRA1004809
SRR006906.143665
158314
Gammaproteobacteria
GAC
Val
>SRA1004405
SRR006906.22014
48275
Gammaproteobacteria
GGA
Ser
>SRA1004534
SRR006906.60369
48275
Gammaproteobacteria
GGA
Ser
>SRA1004531
SRR006906.59484
266714
Gammaproteobacteria
>SRA1004666
SRR006906.98003
266714
Gammaproteobacteria
>SRA1004357
SRR006906.9404
143994
Gammaproteobacteria
CAT
Met
>SRA1004385
SRR006906.17788
143994
Gammaproteobacteria
CAT
Met
>SRA1004427
SRR006906.28483
105183
Gammaproteobacteria
CAA
Leu
>SRA1004530
SRR006906.59271
256944
Gammaproteobacteria
GTT
Asn
>SRA1004664
SRR006906.96958
256944
Gammaproteobacteria
GTT
Asn
>SRA1004719
SRR006906.112865
318222
Gammaproteobacteria
TAC
Val
>SRA1004673
SRR006906.99314
257882
Gammaproteobacteria
GCC
Gly
>SRA1004559
SRR006906.68441
124568
Gammaproteobacteria
>SRA1004695
SRR006906.105304
124568
Gammaproteobacteria
>SRA1004569
SRR006906.71846
257883
Gammaproteobacteria
TGT
Thr
>SRA1004888
SRR006906.173815
257883
Gammaproteobacteria
TGT
Thr
>SRA1005027
SRR006906.231571
257883
Gammaproteobacteria
TGT
Thr
>SRA1004660
SRR006906.96168
369881
Gammaproteobacteria
TTG
Gln
>SRA1005045
SRR006906.238523
11992
Gammaproteobacteria
>SRA1004941
SRR006906.190161
142249
Gammaproteobacteria
>SRA1005011
SRR006906.221770
179835
Gammaproteobacteria
TCT
Arg
>SRA1005030
SRR006906.231858
179835
Gammaproteobacteria
TCT
Arg
>SRA1004840
SRR006906.159835
369341
Gammaproteobacteria
CCG
Arg
>SRA1004906
SRR006906.178157
369341
Gammaproteobacteria
CCG
Arg
>SRA1004684
SRR006906.102094
18233
Gammaproteobacteria
TGA
Ser
>SRA1005032
SRR006906.233229
18233
Gammaproteobacteria
TGA
Ser
>SRA1004962
SRR006906.199776
272733
Gammaproteobacteria
GAA
Phe
>SRA1004392
SRR006906.18750
78669
Gammaproteobacteria
CAG
Leu
>SRA1004416
SRR006906.25744
78669
Gammaproteobacteria
CAG
Leu
>SRA1004605
SRR006906.82607
78669
Gammaproteobacteria
CAG
Leu
>SRA1004620
SRR006906.87489
78669
Gammaproteobacteria
CAG
Leu
>SRA1004859
SRR006906.164724
78669
Gammaproteobacteria
CAG
Leu
>SRA1004618
SRR006906.86519
178091
Gammaproteobacteria
TAC
Val
>SRA1004377
SRR006906.16502
7937
Gammaproteobacteria
GCT
Ser
>SRA1004680
SRR006906.100788
118084
Gammaproteobacteria
TAG
Leu
>SRA1004576
SRR006906.75136
117804
Gammaproteobacteria
TAG
Leu
>SRA1004756
SRR006906.124788
117804
Gammaproteobacteria
TAG
Leu
>SRA1004803
SRR006906.142799
117804
Gammaproteobacteria
TAG
Leu
>SRA1004894
SRR006906.175199
117804
Gammaproteobacteria
TAG
Leu
>SRA1004562
SRR006906.68775
323358
Gammaproteobacteria
GGT
Thr
>SRA1004766
SRR006906.130419
323358
Gammaproteobacteria
GGT
Thr
>SRA1004502
SRR006906.52982
279221
Gammaproteobacteria
GAA
Phe
>SRA1004838
SRR006906.158672
64782
Gammaproteobacteria
>SRA1004402
SRR006906.21192
369423
Gammaproteobacteria
TTT
Lys
>SRA1004845
SRR006906.160875
159691
Gammaproteobacteria
CCT
Arg
>SRA1005048
SRR006906.239951
159691
Gammaproteobacteria
CCT
Arg
>SRA1004499
SRR006906.51969
256948
Gammaproteobacteria
GGT
Thr
>SRA1004378
SRR006906.16502
159265
Gammaproteobacteria
>SRA1005008
SRR006906.221290
159265
Gammaproteobacteria
>SRA1005055
SRR006906.245119
159265
Gammaproteobacteria
>SRA1004851
SRR006906.161666
458485
Gammaproteobacteria
GCA
Cys
>SRA1004548
SRR006906.64823
256943
Gammaproteobacteria
>SRA1004553
SRR006906.67215
256943
Gammaproteobacteria
>SRA1004556
SRR006906.67437
256943
Gammaproteobacteria
>SRA1004560
SRR006906.68491
256943
Gammaproteobacteria
>SRA1004589
SRR006906.77610
256943
Gammaproteobacteria
>SRA1004613
SRR006906.84525
256943
Gammaproteobacteria
>SRA1004702
SRR006906.106479
256943
Gammaproteobacteria
>SRA1004880
SRR006906.169171
256943
Gammaproteobacteria
>SRA1004954
SRR006906.196522
256943
Gammaproteobacteria
>SRA1004657
SRR006906.95702
210874
Gammaproteobacteria
TGG
Pro
>SRA1004751
SRR006906.123664
210874
Gammaproteobacteria
TGG
Pro
>SRA1004868
SRR006906.166289
311528
Gammaproteobacteria
GTC
Asp
>SRA1005010
SRR006906.221565
159176
Gammaproteobacteria
GAC
Val
>SRA1004698
SRR006906.106276
21668
Gammaproteobacteria
TGA
Ser
>SRA1004726
SRR006906.114851
21668
Gammaproteobacteria
TGA
Ser
>SRA1004767
SRR006906.131745
21668
Gammaproteobacteria
TGA
Ser
>SRA1004769
SRR006906.131834
21668
Gammaproteobacteria
TGA
Ser
>SRA1004898
SRR006906.176060
21668
Gammaproteobacteria
TGA
Ser
>SRA1004905
SRR006906.177168
21668
Gammaproteobacteria
TGA
Ser
>SRA1004909
SRR006906.181083
21668
Gammaproteobacteria
TGA
Ser
>SRA1004915
SRR006906.183708
21668
Gammaproteobacteria
TGA
Ser
>SRA1004366
SRR006906.12110
257885
Gammaproteobacteria
TAC
Val
>SRA1004627
SRR006906.88835
257885
Gammaproteobacteria
TAC
Val
>SRA1004580
SRR006906.76299
105039
Gammaproteobacteria
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
BACK