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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1014276
SRR023845.68048
88872
Bacteroidota
GTA
Tyr
>SRA1014739
SRR023845.291170
88872
Bacteroidota
GTA
Tyr
>SRA1014263
SRR023845.65739
175420
Bacteroidota
>SRA1014278
SRR023845.68784
175420
Bacteroidota
>SRA1014901
SRR023845.373227
175420
Bacteroidota
>SRA1015060
SRR023845.445178
175420
Bacteroidota
>SRA1015160
SRR023845.481770
175420
Bacteroidota
>SRA1014106
SRR023845.902
278554
Bacteroidota
TTT
Lys
>SRA1015315
SRR023846.13367
278554
Bacteroidota
TTT
Lys
>SRA1015316
SRR023846.13367
278554
Bacteroidota
TTT
Lys
>SRA1015370
SRR023846.32388
278554
Bacteroidota
TTT
Lys
>SRA1016496
SRR023846.531476
278554
Bacteroidota
TTT
Lys
>SRA1016517
SRR023846.540344
278554
Bacteroidota
TTT
Lys
>SRA1016518
SRR023846.540344
278554
Bacteroidota
TTT
Lys
>SRA1014509
SRR023845.172785
451417
Bacteroidota
GCA
Cys
>SRA1014722
SRR023845.282534
162332
Bacteroidota
GTG
His
>SRA1015263
SRR023845.527493
162332
Bacteroidota
GTG
His
>SRA1014199
SRR023845.36176
68433
Bacteroidota
TGT
Thr
>SRA1014809
SRR023845.322740
158554
Bacteroidota
TCT
Arg
>SRA1014545
SRR023845.192877
105464
Bacteroidota
TAG
Leu
>SRA1015143
SRR023845.476809
105464
Bacteroidota
TAG
Leu
>SRA1014307
SRR023845.83485
259268
Bacteroidota
CCC
Gly
>SRA1014804
SRR023845.320344
448553
Bacteroidota
TTG
Gln
>SRA1014971
SRR023845.403438
159125
Bacteroidota
GTC
Asp
>SRA1014994
SRR023845.416432
142990
Bacteroidota
TAC
Val
>SRA1015510
SRR023846.89828
280135
Bacteroidota
CGT
Thr
>SRA1016462
SRR023846.511205
280135
Bacteroidota
CGT
Thr
>SRA1015624
SRR023846.136954
259269
Bacteroidota
GAA
Phe
>SRA1016055
SRR023846.326670
259269
Bacteroidota
GAA
Phe
>SRA1016311
SRR023846.444410
380475
Bacteroidota
CCG
Arg
>SRA1016461
SRR023846.511042
257832
Bacteroidota
TTT
Lys
>SRA1015936
SRR023846.270487
28870
Bacteroidota
GGA
Ser
>SRA1015688
SRR023846.158853
211965
Bacteroidota
GTT
Asn
>SRA1015565
SRR023846.113527
232894
Bacteroidota
GTG
His
>SRA1015461
SRR023846.69393
455767
Bacteroidota
TTG
Gln
>SRA1016110
SRR023846.351363
455767
Bacteroidota
TTG
Gln
>SRA1016126
SRR023846.357313
28584
Bacteroidota
CGA
Ser
>SRA1015499
SRR023846.85718
380361
Bacteroidota
GGT
Thr
>SRA1015446
SRR023846.62571
51771
Bacteroidota
TGA
Ser
>SRA1015814
SRR023846.209564
380385
Bacteroidota
TTC
Glu
>SRA1015852
SRR023846.228181
380385
Bacteroidota
TTC
Glu
>SRA1015373
SRR023846.34156
141358
Bacteroidota
GAC
Val
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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