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tRNADB-CE

: tRNA gene database curated manually by experts

Takashi Abe¹, Toshimichi Ikemura², Junichi Sugahara³, Akio Kanai³, Yasuo Ohara², Hiroshi Uehara², Makoto Kinouchi⁴,

Shigehiko Kanaya⁵, Yuko Yamada², Akira Muto⁶, Hachiro Inokuchi²

¹. Niigata Univ., ². Nagahama Inst. of Bio-Sci. and Tech., ³. Keio Univ., ⁴. Yamagata Univ., ⁵. NAIST, ⁶. Hirosaki Univ.

The tRNA gene list of Cluster Cluster_56677

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Sequence ID	Genome ID	Domain	Phylum/Class	Species	Amino Acid	Anticodon
CHL090100070	AB042240	Chloroplast	Viridiplantae	Triticum aestivum	Val	GAC
CHL090100077	AB042240	Chloroplast	Viridiplantae	Triticum aestivum	Val	GAC
CHL090100140	AB237912	Chloroplast	Viridiplantae	Nicotiana sylvestris	Val	GAC
CHL090100146	AB237912	Chloroplast	Viridiplantae	Nicotiana sylvestris	Val	GAC
CHL090100168	AB240139	Chloroplast	Viridiplantae	Nicotiana tomentosiformis	Val	GAC
CHL090100174	AB240139	Chloroplast	Viridiplantae	Nicotiana tomentosiformis	Val	GAC
CHL090100213	AE009947	Chloroplast	Viridiplantae	Saccharum hybrid cultivar SP-80-3280	Val	GAC
CHL090100236	AE009947	Chloroplast	Viridiplantae	Saccharum hybrid cultivar SP-80-3280	Val	GAC
CHL090100404	AJ271079	Chloroplast	Viridiplantae	Oenothera elata subsp. hookeri	Val	GAC
CHL090100410	AJ271079	Chloroplast	Viridiplantae	Oenothera elata subsp. hookeri	Val	GAC
CHL090100458	AJ316582	Chloroplast	Viridiplantae	Atropa belladonna	Val	GAC
CHL090100464	AJ316582	Chloroplast	Viridiplantae	Atropa belladonna	Val	GAC
CHL090100513	AJ428413	Chloroplast	Viridiplantae	Calycanthus floridus var. glaucus	Val	GAC
CHL090100519	AJ428413	Chloroplast	Viridiplantae	Calycanthus floridus var. glaucus	Val	GAC
CHL090100541	AJ506156	Chloroplast	Viridiplantae	Amborella trichopoda	Val	GAC
CHL090100547	AJ506156	Chloroplast	Viridiplantae	Amborella trichopoda	Val	GAC
CHL090100568	AJ627251	Chloroplast	Viridiplantae	Nymphaea alba	Val	GAC
CHL090100574	AJ627251	Chloroplast	Viridiplantae	Nymphaea alba	Val	GAC
CHL090100597	AJ879453	Chloroplast	Viridiplantae	Acorus calamus	Val	GAC
CHL090100603	AJ879453	Chloroplast	Viridiplantae	Acorus calamus	Val	GAC
CHL090100649	AM087200	Chloroplast	Viridiplantae	Solanum lycopersicum	Val	GAC
CHL090100655	AM087200	Chloroplast	Viridiplantae	Solanum lycopersicum	Val	GAC
CHL090100701	AM711640	Chloroplast	Viridiplantae	Cuscuta reflexa	Val	GAC
CHL090100705	AM711640	Chloroplast	Viridiplantae	Cuscuta reflexa	Val	GAC
CHL090100728	AP000423	Chloroplast	Viridiplantae	Arabidopsis thaliana	Val	GAC
CHL090100734	AP000423	Chloroplast	Viridiplantae	Arabidopsis thaliana	Val	GAC
CHL090100841	AP006714	Chloroplast	Viridiplantae	Saccharum officinarum	Val	GAC
CHL090100848	AP006714	Chloroplast	Viridiplantae	Saccharum officinarum	Val	GAC
CHL090100904	AP006728	Chloroplast	Viridiplantae	Oryza nivara	Val	GAC
CHL090100911	AP006728	Chloroplast	Viridiplantae	Oryza nivara	Val	GAC
CHL090100930	AP007232	Chloroplast	Viridiplantae	Lactuca sativa	Val	GAC
CHL090100936	AP007232	Chloroplast	Viridiplantae	Lactuca sativa	Val	GAC
CHL090100960	AP008956	Chloroplast	Viridiplantae	Populus alba	Val	GAC
CHL090100966	AP008956	Chloroplast	Viridiplantae	Populus alba	Val	GAC
CHL090100988	AP009123	Chloroplast	Viridiplantae	Gossypium barbadense	Val	GAC
CHL090100994	AP009123	Chloroplast	Viridiplantae	Gossypium barbadense	Val	GAC
CHL090101016	AP009339	Chloroplast	Viridiplantae	Cycas taitungensis	Val	GAC
CHL090101022	AP009339	Chloroplast	Viridiplantae	Cycas taitungensis	Val	GAC
CHL090101044	AP009366	Chloroplast	Viridiplantae	Aethionema cordifolium	Val	GAC
CHL090101050	AP009366	Chloroplast	Viridiplantae	Aethionema cordifolium	Val	GAC
CHL090101072	AP009367	Chloroplast	Viridiplantae	Aethionema grandiflorum	Val	GAC
CHL090101078	AP009367	Chloroplast	Viridiplantae	Aethionema grandiflorum	Val	GAC
CHL090101100	AP009368	Chloroplast	Viridiplantae	Olimarabidopsis pumila	Val	GAC
CHL090101106	AP009368	Chloroplast	Viridiplantae	Olimarabidopsis pumila	Val	GAC
CHL090101128	AP009369	Chloroplast	Viridiplantae	Arabis hirsuta	Val	GAC
CHL090101134	AP009369	Chloroplast	Viridiplantae	Arabis hirsuta	Val	GAC
CHL090101156	AP009370	Chloroplast	Viridiplantae	Barbarea verna	Val	GAC
CHL090101162	AP009370	Chloroplast	Viridiplantae	Barbarea verna	Val	GAC
CHL090101184	AP009371	Chloroplast	Viridiplantae	Capsella bursa-pastoris	Val	GAC
CHL090101190	AP009371	Chloroplast	Viridiplantae	Capsella bursa-pastoris	Val	GAC
CHL090101212	AP009372	Chloroplast	Viridiplantae	Crucihimalaya wallichii	Val	GAC
CHL090101218	AP009372	Chloroplast	Viridiplantae	Crucihimalaya wallichii	Val	GAC
CHL090101242	AP009373	Chloroplast	Viridiplantae	Draba nemorosa	Val	GAC
CHL090101248	AP009373	Chloroplast	Viridiplantae	Draba nemorosa	Val	GAC
CHL090101270	AP009374	Chloroplast	Viridiplantae	Lepidium virginicum	Val	GAC
CHL090101276	AP009374	Chloroplast	Viridiplantae	Lepidium virginicum	Val	GAC
CHL090101298	AP009375	Chloroplast	Viridiplantae	Lobularia maritima	Val	GAC
CHL090101304	AP009375	Chloroplast	Viridiplantae	Lobularia maritima	Val	GAC
CHL090101326	AP009376	Chloroplast	Viridiplantae	Nasturtium officinale	Val	GAC
CHL090101332	AP009376	Chloroplast	Viridiplantae	Nasturtium officinale	Val	GAC
CHL090101465	AY522329	Chloroplast	Viridiplantae	Oryza sativa Indica Group	Val	GAC
CHL090101472	AY522329	Chloroplast	Viridiplantae	Oryza sativa Indica Group	Val	GAC
CHL090101494	AY522331	Chloroplast	Viridiplantae	Oryza sativa (japonica cultivar-group) isolate PA64S	Val	GAC
CHL090101501	AY522331	Chloroplast	Viridiplantae	Oryza sativa (japonica cultivar-group) isolate PA64S	Val	GAC
CHL090101522	AY582139	Chloroplast	Viridiplantae	Panax ginseng	Val	GAC
CHL090101528	AY582139	Chloroplast	Viridiplantae	Panax ginseng	Val	GAC
CHL090101630	AY780259	Chloroplast	Viridiplantae	Eucalyptus globulus subsp. Globulus	Val	GAC
CHL090101636	AY780259	Chloroplast	Viridiplantae	Eucalyptus globulus subsp. Globulus	Val	GAC
CHL090101688	AY928077	Chloroplast	Viridiplantae	Zea mays cultivar B73	Val	GAC
CHL090101695	AY928077	Chloroplast	Viridiplantae	Zea mays cultivar B73	Val	GAC
CHL090101852	DQ226511	Chloroplast	Viridiplantae	Morus indica	Val	GAC
CHL090101858	DQ226511	Chloroplast	Viridiplantae	Morus indica	Val	GAC
CHL090101908	DQ231562	Chloroplast	Viridiplantae	Solanum tuberosum	Val	GAC
CHL090101914	DQ231562	Chloroplast	Viridiplantae	Solanum tuberosum	Val	GAC
CHL090101991	DQ345959	Chloroplast	Viridiplantae	Gossypium hirsutum	Val	GAC
CHL090101996	DQ345959	Chloroplast	Viridiplantae	Gossypium hirsutum	Val	GAC
CHL090102019	DQ347958	Chloroplast	Viridiplantae	Solanum bulbocastanum	Val	GAC
CHL090102025	DQ347958	Chloroplast	Viridiplantae	Solanum bulbocastanum	Val	GAC
CHL090102047	DQ347959	Chloroplast	Viridiplantae	Lycopersicon esculentum cultivar LA3023	Val	GAC
CHL090102053	DQ347959	Chloroplast	Viridiplantae	Lycopersicon esculentum cultivar LA3023	Val	GAC
CHL090102076	DQ354691	Chloroplast	Viridiplantae	Nuphar advena	Val	GAC
CHL090102083	DQ354691	Chloroplast	Viridiplantae	Nuphar advena	Val	GAC
CHL090102129	DQ383815	Chloroplast	Viridiplantae	Helianthus annuus	Val	GAC
CHL090102134	DQ383815	Chloroplast	Viridiplantae	Helianthus annuus	Val	GAC
CHL090102156	DQ383816	Chloroplast	Viridiplantae	Lactuca sativa cultivar Salinas	Val	GAC
CHL090102161	DQ383816	Chloroplast	Viridiplantae	Lactuca sativa cultivar Salinas	Val	GAC
CHL090102186	DQ386163	Chloroplast	Viridiplantae	Solanum tuberosum cultivar Desiree	Val	GAC
CHL090102192	DQ386163	Chloroplast	Viridiplantae	Solanum tuberosum cultivar Desiree	Val	GAC
CHL090102275	DQ424856	Chloroplast	Viridiplantae	Vitis vinifera	Val	GAC
CHL090102281	DQ424856	Chloroplast	Viridiplantae	Vitis vinifera	Val	GAC
CHL090102388	DQ864733	Chloroplast	Viridiplantae	Citrus sinensis	Val	GAC
CHL090102394	DQ864733	Chloroplast	Viridiplantae	Citrus sinensis	Val	GAC
CHL090102501	DQ887676	Chloroplast	Viridiplantae	Drimys granadensis	Val	GAC
CHL090102508	DQ887676	Chloroplast	Viridiplantae	Drimys granadensis	Val	GAC
CHL090102529	DQ887677	Chloroplast	Viridiplantae	Piper cenocladum	Val	GAC
CHL090102534	DQ887677	Chloroplast	Viridiplantae	Piper cenocladum	Val	GAC
CHL090102561	DQ897681	Chloroplast	Viridiplantae	Pelargonium x hortorum	Val	GAC
CHL090102568	DQ897681	Chloroplast	Viridiplantae	Pelargonium x hortorum	Val	GAC
CHL090102586	DQ898156	Chloroplast	Viridiplantae	Daucus carota	Val	GAC
CHL090102592	DQ898156	Chloroplast	Viridiplantae	Daucus carota	Val	GAC
CHL090102614	DQ899947	Chloroplast	Viridiplantae	Liriodendron tulipifera	Val	GAC
CHL090102620	DQ899947	Chloroplast	Viridiplantae	Liriodendron tulipifera	Val	GAC
CHL090102670	DQ923117	Chloroplast	Viridiplantae	Nandina domestica	Val	GAC
CHL090102676	DQ923117	Chloroplast	Viridiplantae	Nandina domestica	Val	GAC
CHL090102698	EF044213	Chloroplast	Viridiplantae	Coffea arabica	Val	GAC
CHL090102704	EF044213	Chloroplast	Viridiplantae	Coffea arabica	Val	GAC
CHL090102783	EF115541	Chloroplast	Viridiplantae	Hordeum vulgare subsp. vulgare	Val	GAC
CHL090102789	EF115541	Chloroplast	Viridiplantae	Hordeum vulgare subsp. vulgare	Val	GAC
CHL090102812	EF115542	Chloroplast	Viridiplantae	Sorghum bicolor	Val	GAC
CHL090102818	EF115542	Chloroplast	Viridiplantae	Sorghum bicolor	Val	GAC
CHL090102841	EF115543	Chloroplast	Viridiplantae	Agrostis stolonifera	Val	GAC
CHL090102847	EF115543	Chloroplast	Viridiplantae	Agrostis stolonifera	Val	GAC
CHL090102869	EF380351	Chloroplast	Viridiplantae	Buxus microphylla	Val	GAC
CHL090102875	EF380351	Chloroplast	Viridiplantae	Buxus microphylla	Val	GAC
CHL090102897	EF380352	Chloroplast	Viridiplantae	Chloranthus spicatus	Val	GAC
CHL090102903	EF380352	Chloroplast	Viridiplantae	Chloranthus spicatus	Val	GAC
CHL090102926	EF380353	Chloroplast	Viridiplantae	Dioscorea elephantipes	Val	GAC
CHL090102932	EF380353	Chloroplast	Viridiplantae	Dioscorea elephantipes	Val	GAC
CHL090102954	EF380354	Chloroplast	Viridiplantae	Illicium oligandrum	Val	GAC
CHL090102958	EF380354	Chloroplast	Viridiplantae	Illicium oligandrum	Val	GAC
CHL090102980	EF489041	Chloroplast	Viridiplantae	Populus trichocarpa	Val	GAC
CHL090102986	EF489041	Chloroplast	Viridiplantae	Populus trichocarpa	Val	GAC
CHL090103060	EU118126	Chloroplast	Viridiplantae	Ipomoea purpurea	Val	GAC
CHL090103066	EU118126	Chloroplast	Viridiplantae	Ipomoea purpurea	Val	GAC
CHL090103243	X15901	Chloroplast	Viridiplantae	Oryza sativa Japonica Group	Val	GAC
CHL090103250	X15901	Chloroplast	Viridiplantae	Oryza sativa Japonica Group	Val	GAC
CHL090103301	X86563	Chloroplast	Viridiplantae	Zea mays	Val	GAC
CHL090103308	X86563	Chloroplast	Viridiplantae	Zea mays	Val	GAC
CHL090103329	Z00044	Chloroplast	Viridiplantae	Nicotiana tabacum	Val	GAC
CHL090103335	Z00044	Chloroplast	Viridiplantae	Nicotiana tabacum	Val	GAC
R05100176	AP008208	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100228	AP008208	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100289	AP008210	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100300	AP008210	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100302	AP008210	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100306	AP008210	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100417	AP008211	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100484	AP008213	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100525	AP008214	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100573	AP008216	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100577	AP008216	Plant	Plant	Oryza sativa Japonica Group	Val	GAC
R05100612	AP008216	Plant	Plant	Oryza sativa Japonica Group	Val	GAC