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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Euryarchaeota : Methanobrevibacter sp. AbM4 [CP004050]
HIT:
37 sequence(s).
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb"
(1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006"
.
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008"
.
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
>A171003559
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
768343
768416
+
Ala
TGC
-
--
¡û
>A171003571
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1661995
1661921
-
Ala
TGC
-
--
¡û
>A171003549
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
169599
169674
+
Arg
GCG
-
--
¡û
>A171003561
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1880640
1880715
+
Arg
TCT
-
--
¡û
>A171003562
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1880790
1880863
+
Arg
CCT
-
--
¡û
>A171003563
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1913570
1913644
+
Arg
TCG
-
--
¡û
>A171003565
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851618
1851545
-
Asn
GTT
-
--
¡û
>A171003554
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
412636
412708
+
Asp
GTC
-
--
¡û
>A171003574
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1429915
1429844
-
Cys
GCA
-
--
¡û
>A171003578
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
533402
533329
-
Gln
TTG
-
--
¡û
>A171003550
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
216193
216268
+
Glu
CTC
-
--
¡û
>A171003567
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851435
1851359
-
Glu
TTC
-
--
¡û
>A171003577
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
665125
665052
-
Gly
TCC
-
--
¡û
>A171003576
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
665204
665128
-
Gly
GCC
-
--
¡û
>A171003569
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851195
1851120
-
His
GTG
-
--
¡û
>A173000139
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
306209
306134
-
Ile
GAT
-
--
¡û
>A173000138
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
306318
306243
-
Ile
GAT
-
--
¡û
>A171003560
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
912046
912130
+
Leu
GAG
-
--
¡û
>A171003570
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1694371
1694288
-
Leu
TAA
-
--
¡û
>A171003568
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851313
1851231
-
Leu
TAG
-
--
¡û
>A171003555
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
412800
412873
+
Lys
TTT
-
--
¡û
>A178000365
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
226731
226619
-
Met
CAT
-
--
¡û
>A171003566
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851541
1851466
-
Met
CAT
-
--
¡û
>A171003564
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1867208
1867133
-
Met
CAT
-
--
¡û
>A171003558
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
632661
632734
+
Phe
GAA
-
--
¡û
>A171003552
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
412357
412432
+
Pro
TGG
-
--
¡û
>A171003575
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
900363
900292
-
Pseudo
CGT
-
--
¡û
>A173000136
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1275450
1275522
+
Pseudo
CTG
-
--
¡û
>A171003556
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
432821
432906
+
Ser
TGA
-
--
¡û
>A171003573
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1491329
1491243
-
Ser
GGA
-
--
¡û
>A171003572
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1538218
1538132
-
Ser
GCT
-
--
¡û
>A171003551
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
412019
412091
+
Thr
TGT
-
--
¡û
>A173000137
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1694257
1694185
-
Thr
GGT
-
--
¡û
>A17A001010
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1850490
1850333
-
Trp
CCA
-
--
¡û
>A171003553
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
412435
412510
+
Tyr
GTA
-
--
¡û
>A171003579
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
80724
80652
-
Val
TAC
-
--
¡û
>A171003557
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
632586
632657
+
Val
GAC
-
--
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
Download Sequence
View ClustalW result
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