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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTKF] metagenome; soil
HIT:
160 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180033206
FTKF01044838
[FTKF] metagenome; soil
1
72
+
Cys
GCA
[ENA]
¢þ
>WENV180033223
FTKF01083323
[FTKF] metagenome; soil
1
76
+
Glu
CTC
[ENA]
¢þ
>WENV180033212
FTKF01054283
[FTKF] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180033296
FTKF01405585
[FTKF] metagenome; soil
4
78
+
fMet
CAT
[ENA]
¢þ
>WENV180033289
FTKF01328236
[FTKF] metagenome; soil
6
79
+
Leu
TAG
[ENA]
¢þ
>WENV180033260
FTKF01178994
[FTKF] metagenome; soil
6
81
+
His
GTG
[ENA]
¢þ
>WENV180033207
FTKF01047140
[FTKF] metagenome; soil
9
80
+
Gly
TCC
[ENA]
¢þ
>WENV180033252
FTKF01141177
[FTKF] metagenome; soil
17
90
+
Cys
GCA
[ENA]
¢þ
>WENV180033231
FTKF01100304
[FTKF] metagenome; soil
17
109
+
Ser
GCT
[ENA]
¢þ
>WENV180033255
FTKF01161717
[FTKF] metagenome; soil
18
92
+
Gln
CTG
[ENA]
¢þ
>WENV180033273
FTKF01224952
[FTKF] metagenome; soil
27
102
+
Asn
GTT
[ENA]
¢þ
>WENV180033257
FTKF01167359
[FTKF] metagenome; soil
38
113
+
Thr
TGT
[ENA]
¢þ
>WENV180033180
FTKF01015953
[FTKF] metagenome; soil
44
117
+
Asn
GTT
[ENA]
¢þ
>WENV180033199
FTKF01034839
[FTKF] metagenome; soil
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180033208
FTKF01048875
[FTKF] metagenome; soil
47
118
+
Gln
CTG
[ENA]
¢þ
>WENV180033282
FTKF01264899
[FTKF] metagenome; soil
51
126
+
Ile
GAT
[ENA]
¢þ
>WENV180033145
FTKF01000921
[FTKF] metagenome; soil
56
130
+
Phe
GAA
[ENA]
¢þ
>WENV180033261
FTKF01184505
[FTKF] metagenome; soil
56
130
+
Phe
GAA
[ENA]
¢þ
>WENV180033214
FTKF01057562
[FTKF] metagenome; soil
59
134
+
Lys
TTT
[ENA]
¢þ
>WENV180033198
FTKF01034072
[FTKF] metagenome; soil
59
134
+
Ile2
CAT
[ENA]
¢þ
>WENV180033201
FTKF01035523
[FTKF] metagenome; soil
71
145
+
Thr
CGT
[ENA]
¢þ
>WENV180033137
FTKF01000001
[FTKF] metagenome; soil
72
144
+
Val
TAC
[ENA]
¢þ
>WENV180033284
FTKF01282592
[FTKF] metagenome; soil
74
1
-
Thr
GGT
[ENA]
¢þ
>WENV180033215
FTKF01058219
[FTKF] metagenome; soil
74
148
+
Gln
CTG
[ENA]
¢þ
>WENV180033291
FTKF01344080
[FTKF] metagenome; soil
76
4
-
Val
GAC
[ENA]
¢þ
>WENV180033266
FTKF01193628
[FTKF] metagenome; soil
76
147
+
Gly
TCC
[ENA]
¢þ
>WENV180033247
FTKF01127563
[FTKF] metagenome; soil
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV180033259
FTKF01174398
[FTKF] metagenome; soil
77
2
-
Thr
GGT
[ENA]
¢þ
>WENV180033202
FTKF01035662
[FTKF] metagenome; soil
77
6
-
Arg
TCG
[ENA]
¢þ
>WENV180033229
FTKF01094070
[FTKF] metagenome; soil
78
151
+
Gly
TCC
[ENA]
¢þ
>WENV180033185
FTKF01022753
[FTKF] metagenome; soil
82
1
-
Ser
AGA
[ENA]
¢þ
>WENV180033251
FTKF01140408
[FTKF] metagenome; soil
83
6
-
Trp
CCA
[ENA]
¢þ
>WENV180033278
FTKF01239361
[FTKF] metagenome; soil
92
21
-
Gln
TTG
[ENA]
¢þ
>WENV180033248
FTKF01131746
[FTKF] metagenome; soil
94
20
-
Arg
ACG
[ENA]
¢þ
>WENV180033188
FTKF01024690
[FTKF] metagenome; soil
94
169
+
Ala
GGC
[ENA]
¢þ
>WENV180033288
FTKF01323546
[FTKF] metagenome; soil
96
171
+
Phe
GAA
[ENA]
¢þ
>WENV180033265
FTKF01191163
[FTKF] metagenome; soil
106
14
-
Ser
GCT
[ENA]
¢þ
>WENV180033174
FTKF01009600
[FTKF] metagenome; soil
117
191
+
Arg
CCT
[ENA]
¢þ
>WENV180033243
FTKF01117248
[FTKF] metagenome; soil
119
43
-
Arg
TCT
[ENA]
¢þ
>WENV180033253
FTKF01154737
[FTKF] metagenome; soil
120
193
+
Val
AAC
[ENA]
¢þ
>WENV180033176
FTKF01011607
[FTKF] metagenome; soil
122
51
-
Asp
GTC
[ENA]
¢þ
>WENV180033195
FTKF01028449
[FTKF] metagenome; soil
125
52
-
Gly
TCC
[ENA]
¢þ
>WENV180033162
FTKF01003185
[FTKF] metagenome; soil
126
214
+
Ser
TGA
[ENA]
¢þ
>WENV180033236
FTKF01111068
[FTKF] metagenome; soil
129
57
-
Ala
TGC
[ENA]
¢þ
>WENV180033172
FTKF01008550
[FTKF] metagenome; soil
131
206
+
Thr
TGT
[ENA]
¢þ
>WENV180033275
FTKF01231975
[FTKF] metagenome; soil
133
57
-
Ile
GAT
[ENA]
¢þ
>WENV180033197
FTKF01032771
[FTKF] metagenome; soil
137
42
-
SeC
TCA
[ENA]
¢þ
>WENV180033280
FTKF01249078
[FTKF] metagenome; soil
146
76
-
Gly
GCC
[ENA]
¢þ
>WENV180033224
FTKF01083323
[FTKF] metagenome; soil
147
222
+
Glu
CTC
[ENA]
¢þ
>WENV180033209
FTKF01048875
[FTKF] metagenome; soil
152
226
+
Glu
CTC
[ENA]
¢þ
>WENV180033274
FTKF01229884
[FTKF] metagenome; soil
153
80
-
Cys
GCA
[ENA]
¢þ
>WENV180033254
FTKF01154791
[FTKF] metagenome; soil
153
82
-
Met
CAT
[ENA]
¢þ
>WENV180033194
FTKF01027726
[FTKF] metagenome; soil
159
83
-
fMet
CAT
[ENA]
¢þ
>WENV180033182
FTKF01017747
[FTKF] metagenome; soil
181
252
+
Glu
TTC
[ENA]
¢þ
>WENV180033290
FTKF01344080
[FTKF] metagenome; soil
183
110
-
Cys
GCA
[ENA]
¢þ
>WENV180033196
FTKF01029674
[FTKF] metagenome; soil
188
118
-
Gly
GCC
[ENA]
¢þ
>WENV180033186
FTKF01023625
[FTKF] metagenome; soil
192
266
+
fMet
CAT
[ENA]
¢þ
>WENV180033226
FTKF01089884
[FTKF] metagenome; soil
198
125
-
Glu
TTC
[ENA]
¢þ
>WENV180033187
FTKF01024522
[FTKF] metagenome; soil
199
127
-
Gln
CTG
[ENA]
¢þ
>WENV180033256
FTKF01165726
[FTKF] metagenome; soil
200
126
-
Lys
CTT
[ENA]
¢þ
>WENV180033293
FTKF01356805
[FTKF] metagenome; soil
202
126
-
fMet
CAT
[ENA]
¢þ
>WENV180033210
FTKF01048980
[FTKF] metagenome; soil
205
282
+
Gln
CTG
[ENA]
¢þ
>WENV180033203
FTKF01038775
[FTKF] metagenome; soil
208
292
+
Leu
TAG
[ENA]
¢þ
>WENV180033272
FTKF01223581
[FTKF] metagenome; soil
223
145
-
Ala
CGC
[ENA]
¢þ
>WENV180033276
FTKF01234516
[FTKF] metagenome; soil
236
310
+
fMet
CAT
[ENA]
¢þ
>WENV180033279
FTKF01248467
[FTKF] metagenome; soil
248
324
+
Met
CAT
[ENA]
¢þ
>WENV180033249
FTKF01135756
[FTKF] metagenome; soil
250
174
-
Lys
TTT
[ENA]
¢þ
>WENV180033250
FTKF01138712
[FTKF] metagenome; soil
257
332
+
His
GTG
[ENA]
¢þ
>WENV180033170
FTKF01004415
[FTKF] metagenome; soil
261
337
+
Val
AAC
[ENA]
¢þ
>WENV180033225
FTKF01083323
[FTKF] metagenome; soil
267
341
+
Gln
CTG
[ENA]
¢þ
>WENV180033184
FTKF01021123
[FTKF] metagenome; soil
280
351
+
Met
CAT
[ENA]
¢þ
>WENV180033244
FTKF01119570
[FTKF] metagenome; soil
282
209
-
Val
CAC
[ENA]
¢þ
>WENV180033283
FTKF01268893
[FTKF] metagenome; soil
292
219
-
Asn
GTT
[ENA]
¢þ
>WENV180033242
FTKF01117019
[FTKF] metagenome; soil
295
221
-
Gln
TTG
[ENA]
¢þ
>WENV180033230
FTKF01096604
[FTKF] metagenome; soil
299
213
-
Ser
GGA
[ENA]
¢þ
>WENV180033183
FTKF01017959
[FTKF] metagenome; soil
302
374
+
Val
TAC
[ENA]
¢þ
>WENV180033179
FTKF01015157
[FTKF] metagenome; soil
308
233
-
Thr
TGT
[ENA]
¢þ
>WENV180033292
FTKF01345801
[FTKF] metagenome; soil
326
398
+
Gly
GCC
[ENA]
¢þ
>WENV180033221
FTKF01074642
[FTKF] metagenome; soil
328
252
-
Met
CAT
[ENA]
¢þ
>WENV180033222
FTKF01077919
[FTKF] metagenome; soil
350
424
+
Lys
CTT
[ENA]
¢þ
>WENV180033200
FTKF01035307
[FTKF] metagenome; soil
354
272
-
Leu
TAA
[ENA]
¢þ
>WENV180033234
FTKF01104658
[FTKF] metagenome; soil
378
294
-
Leu
CAA
[ENA]
¢þ
>WENV180033175
FTKF01011126
[FTKF] metagenome; soil
405
486
+
Ser
AGA
[ENA]
¢þ
>WENV180033294
FTKF01385183
[FTKF] metagenome; soil
410
486
+
Asp
GTC
[ENA]
¢þ
>WENV180033239
FTKF01116877
[FTKF] metagenome; soil
496
568
+
Gly
GCC
[ENA]
¢þ
>WENV180033270
FTKF01202451
[FTKF] metagenome; soil
527
452
-
Gly
GCC
[ENA]
¢þ
>WENV180033190
FTKF01025650
[FTKF] metagenome; soil
558
484
-
fMet
CAT
[ENA]
¢þ
>WENV180033232
FTKF01102915
[FTKF] metagenome; soil
581
495
-
Leu
TAA
[ENA]
¢þ
>WENV180033281
FTKF01251873
[FTKF] metagenome; soil
609
681
+
Arg
CCG
[ENA]
¢þ
>WENV180033156
FTKF01002686
[FTKF] metagenome; soil
612
686
+
fMet
CAT
[ENA]
¢þ
>WENV180033169
FTKF01004355
[FTKF] metagenome; soil
621
696
+
Ile2
CAT
[ENA]
¢þ
>WENV180033233
FTKF01104658
[FTKF] metagenome; soil
636
560
-
Lys
TTT
[ENA]
¢þ
>WENV180033227
FTKF01092161
[FTKF] metagenome; soil
641
714
+
Asn
GTT
[ENA]
¢þ
>WENV180033240
FTKF01116877
[FTKF] metagenome; soil
643
715
+
Gly
GCC
[ENA]
¢þ
>WENV180033269
FTKF01202451
[FTKF] metagenome; soil
647
574
-
Gly
GCC
[ENA]
¢þ
>WENV180033161
FTKF01003088
[FTKF] metagenome; soil
652
577
-
Asp
GTC
[ENA]
¢þ
>WENV180033193
FTKF01026881
[FTKF] metagenome; soil
666
593
-
Asn
GTT
[ENA]
¢þ
>WENV180033163
FTKF01003198
[FTKF] metagenome; soil
695
768
+
Trp
CCA
[ENA]
¢þ
>WENV180033235
FTKF01104929
[FTKF] metagenome; soil
704
779
+
Ala
CGC
[ENA]
¢þ
>WENV180033220
FTKF01071998
[FTKF] metagenome; soil
751
824
+
Gly
CCC
[ENA]
¢þ
>WENV180033228
FTKF01092161
[FTKF] metagenome; soil
776
849
+
Asn
GTT
[ENA]
¢þ
>WENV180033241
FTKF01116877
[FTKF] metagenome; soil
790
862
+
Gly
GCC
[ENA]
¢þ
>WENV180033144
FTKF01000822
[FTKF] metagenome; soil
805
717
-
Ser
TGA
[ENA]
¢þ
>WENV180033246
FTKF01127457
[FTKF] metagenome; soil
843
770
-
Asn
GTT
[ENA]
¢þ
>WENV180033238
FTKF01113712
[FTKF] metagenome; soil
867
941
+
Gln
TTG
[ENA]
¢þ
>WENV180033213
FTKF01057052
[FTKF] metagenome; soil
900
826
-
Lys
CTT
[ENA]
¢þ
>WENV180033267
FTKF01201918
[FTKF] metagenome; soil
918
994
+
Lys
TTT
[ENA]
¢þ
>WENV180033237
FTKF01112034
[FTKF] metagenome; soil
950
1024
+
Val
CAC
[ENA]
¢þ
>WENV180033157
FTKF01002686
[FTKF] metagenome; soil
957
1031
+
fMet
CAT
[ENA]
¢þ
>WENV180033147
FTKF01001066
[FTKF] metagenome; soil
963
889
-
fMet
CAT
[ENA]
¢þ
>WENV180033245
FTKF01127457
[FTKF] metagenome; soil
978
905
-
Asn
GTT
[ENA]
¢þ
>WENV180033258
FTKF01169369
[FTKF] metagenome; soil
1031
1115
+
Leu
CAA
[ENA]
¢þ
>WENV180033205
FTKF01040973
[FTKF] metagenome; soil
1044
968
-
Arg
ACG
[ENA]
¢þ
>WENV180033159
FTKF01002882
[FTKF] metagenome; soil
1049
963
-
Leu
CAG
[ENA]
¢þ
>WENV180033268
FTKF01201918
[FTKF] metagenome; soil
1102
1186
+
Leu
CAA
[ENA]
¢þ
>WENV180033177
FTKF01011925
[FTKF] metagenome; soil
1128
1199
+
Met
CAT
[ENA]
¢þ
>WENV180033154
FTKF01002343
[FTKF] metagenome; soil
1150
1224
+
Gln
TTG
[ENA]
¢þ
>WENV180033295
FTKF01405191
[FTKF] metagenome; soil
1161
1242
+
Ser
AGA
[ENA]
¢þ
>WENV180033148
FTKF01001418
[FTKF] metagenome; soil
1182
1108
-
Lys
CTT
[ENA]
¢þ
>WENV180033286
FTKF01295034
[FTKF] metagenome; soil
1220
1148
-
Val
GAC
[ENA]
¢þ
>WENV180033216
FTKF01060087
[FTKF] metagenome; soil
1278
1194
-
Leu
GAG
[ENA]
¢þ
>WENV180033271
FTKF01210236
[FTKF] metagenome; soil
1281
1204
-
Trp
CCA
[ENA]
¢þ
>WENV180033211
FTKF01050734
[FTKF] metagenome; soil
1393
1318
-
Thr
GGT
[ENA]
¢þ
>WENV180033153
FTKF01002144
[FTKF] metagenome; soil
1415
1338
-
Leu
TAG
[ENA]
¢þ
>WENV180033192
FTKF01025877
[FTKF] metagenome; soil
1555
1484
-
Gly
TCC
[ENA]
¢þ
>WENV180033219
FTKF01061474
[FTKF] metagenome; soil
1558
1485
-
Val
CAC
[ENA]
¢þ
>WENV180033155
FTKF01002502
[FTKF] metagenome; soil
1569
1482
-
Leu
GAG
[ENA]
¢þ
>WENV180033217
FTKF01060810
[FTKF] metagenome; soil
1630
1556
-
Leu
CAA
[ENA]
¢þ
>WENV180033171
FTKF01006418
[FTKF] metagenome; soil
1656
1585
-
Gly
CCC
[ENA]
¢þ
>WENV180033181
FTKF01017033
[FTKF] metagenome; soil
1676
1602
-
Gly
GCC
[ENA]
¢þ
>WENV180033143
FTKF01000618
[FTKF] metagenome; soil
1689
1614
-
Pro
CGG
[ENA]
¢þ
>WENV180033191
FTKF01025877
[FTKF] metagenome; soil
1723
1797
+
Pro
TGG
[ENA]
¢þ
>WENV180033139
FTKF01000037
[FTKF] metagenome; soil
1755
1828
+
Arg
CCT
[ENA]
¢þ
>WENV180033218
FTKF01061474
[FTKF] metagenome; soil
1841
1768
-
Val
CAC
[ENA]
¢þ
>WENV180033204
FTKF01040168
[FTKF] metagenome; soil
1905
1831
-
fMet
CAT
[ENA]
¢þ
>WENV180033158
FTKF01002735
[FTKF] metagenome; soil
2078
2151
+
Ala
GGC
[ENA]
¢þ
>WENV180033141
FTKF01000324
[FTKF] metagenome; soil
2250
2323
+
Ala
TGC
[ENA]
¢þ
>WENV180033178
FTKF01013737
[FTKF] metagenome; soil
2290
2365
+
Ile
GAT
[ENA]
¢þ
>WENV180033189
FTKF01024860
[FTKF] metagenome; soil
2334
2259
-
Pro
CGG
[ENA]
¢þ
>WENV180033287
FTKF01296404
[FTKF] metagenome; soil
2508
2437
-
Gly
CCC
[ENA]
¢þ
>WENV180033173
FTKF01008617
[FTKF] metagenome; soil
2548
2463
-
Leu
CAA
[ENA]
¢þ
>WENV180033264
FTKF01184929
[FTKF] metagenome; soil
2875
2802
-
Ala
GGC
[ENA]
¢þ
>WENV180033285
FTKF01283992
[FTKF] metagenome; soil
2960
3035
+
Arg
TCT
[ENA]
¢þ
>WENV180033164
FTKF01003463
[FTKF] metagenome; soil
3013
2939
-
Lys
CTT
[ENA]
¢þ
>WENV180033168
FTKF01003829
[FTKF] metagenome; soil
3219
3139
-
Tyr
GTA
[ENA]
¢þ
>WENV180033263
FTKF01184929
[FTKF] metagenome; soil
3405
3332
-
Ala
GGC
[ENA]
¢þ
>WENV180033167
FTKF01003829
[FTKF] metagenome; soil
3425
3339
-
Ser
GCT
[ENA]
¢þ
>WENV180033166
FTKF01003829
[FTKF] metagenome; soil
3500
3429
-
Gln
CTG
[ENA]
¢þ
>WENV180033262
FTKF01184929
[FTKF] metagenome; soil
3515
3442
-
Ala
GGC
[ENA]
¢þ
>WENV180033165
FTKF01003556
[FTKF] metagenome; soil
4327
4401
+
Glu
TTC
[ENA]
¢þ
>WENV180033160
FTKF01003060
[FTKF] metagenome; soil
4351
4434
+
Tyr
GTA
[ENA]
¢þ
>WENV180033138
FTKF01000011
[FTKF] metagenome; soil
4431
4357
-
Pro
GGG
[ENA]
¢þ
>WENV180033150
FTKF01001741
[FTKF] metagenome; soil
5244
5171
-
Lys
TTT
[ENA]
¢þ
>WENV180033149
FTKF01001421
[FTKF] metagenome; soil
6131
6058
-
Arg
CCT
[ENA]
¢þ
>WENV180033151
FTKF01002096
[FTKF] metagenome; soil
6721
6634
-
Leu
GAG
[ENA]
¢þ
>WENV180033152
FTKF01002120
[FTKF] metagenome; soil
12477
12403
-
Pro
GGG
[ENA]
¢þ
>WENV180033146
FTKF01001000
[FTKF] metagenome; soil
13089
13016
-
Lys
TTT
[ENA]
¢þ
>WENV180033142
FTKF01000387
[FTKF] metagenome; soil
16538
16464
-
fMet
CAT
[ENA]
¢þ
>WENV180033140
FTKF01000225
[FTKF] metagenome; soil
18076
18002
-
Thr
CGT
[ENA]
¢þ
>WENV180033277
FTKF01238039
[FTKF] metagenome; soil
21276
21190
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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