This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102923 (24 seq.)
>A171004374
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2154810
2154726
-
Ser
GGA
-
¡û
>A171004704
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
811416
811331
-
Ser
GGA
-
¡û
>A171004743
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3207875
3207792
-
Ser
GGA
-
¡û
>A171004780
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
3534392
3534477
+
Ser
GGA
-
¡û
>A171004833
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3512542
3512627
+
Ser
GGA
-
¡û
>A171004887
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3836093
3836178
+
Ser
GGA
-
¡û
>A171005147
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2344822
2344907
+
Ser
GGA
-
¡û
>A171005265
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
3922940
3922856
-
Ser
GGA
-
¡û
>A171005588
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3411899
3411815
-
Ser
GGA
-
¡û
>A171005637
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3338982
3338898
-
Ser
GGA
-
¡û
>WENV180345633
OBLN01001325
[OBLN] sediment metagenome; sediment
581
666
+
Ser
GGA
[ENA]
¢þ
>At1377
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1308692
1308774
+
Ser
GGA
[Ensembl]
¡û
>WENV170563923
CZCB01036942
[CZCB] anaerobic digester metagenome; anaerobic digester
495
580
+
Ser
GGA
[ENA]
¢þ
>W1910569447
JJOV01000056
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
43986
43901
-
Ser
GGA
[ENA]
¡û
>W1910569961
JJPF01000065
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
73941
74026
+
Ser
GGA
[ENA]
¡û
>W1910570041
JJPH01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
73941
74026
+
Ser
GGA
[ENA]
¡û
>W1910570133
JJPI01000124
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
60026
60111
+
Ser
GGA
[ENA]
¡û
>W1910570220
JJPK01000065
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
3504
3419
-
Ser
GGA
[ENA]
¡û
>W1910571066
JJQB01000036
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
3505
3420
-
Ser
GGA
[ENA]
¡û
>W1910571134
JJQC01000112
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
3505
3420
-
Ser
GGA
[ENA]
¡û
>W1910571161
JJQD01000052
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
26371
26456
+
Ser
GGA
[ENA]
¡û
>W1910655384
LZPK01000120
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3077
3161
+
Ser
GGA
[ENA]
¡û
>W1610046886
BBCW01000017
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
67661
67745
+
Ser
GGA
[ENA]
¡û
>W1610048618
BBEF01000092
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
3058
3142
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK