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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106143 (20 seq.)
>W1711293878
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
482150
482066
-
Leu
TAG
[ENA]
¡û
>W1711293884
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
481539
481455
-
Leu
TAG
[ENA]
¡û
>W1711293955
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
4324
4408
+
Leu
TAG
[ENA]
¡û
>W1711293961
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
4935
5019
+
Leu
TAG
[ENA]
¡û
>W1711294334
LZZI01000101
Bacillota
Clostridium beijerinckii [LZZI]
17027
16943
-
Leu
TAG
[ENA]
¡û
>W1711294452
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
4893
4809
-
Leu
TAG
[ENA]
¡û
>C171045588
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
426027
426111
+
Leu
TAG
-
¡û
>C171045739
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
426027
426111
+
Leu
TAG
-
¡û
>C171045745
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
426638
426722
+
Leu
TAG
-
¡û
>C171045908
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
440106
440190
+
Leu
TAG
-
¡û
>C171045914
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
440717
440801
+
Leu
TAG
-
¡û
>W141083138
AUPH01001976
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
592
508
-
Leu
TAG
[ENA]
¡û
>WENV170690138
LFRM01326857
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
29985
30069
+
Leu
TAG
[ENA]
¢þ
>C181203638
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447486
447570
+
Leu
TAG
-
¡û
>C141007600
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
426028
426112
+
Leu
TAG
[Ensembl]
¡û
>C141007606
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
426639
426723
+
Leu
TAG
[Ensembl]
¡û
>W1810250488
PQCR01000028
Bacillota
Clostridium sp. 2-1 [PQCR]
61737
61653
-
Leu
TAG
[ENA]
¡û
>W1810367594
PVXQ01000013
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
10407
10491
+
Leu
TAG
[ENA]
¡û
>W1810367623
PVXQ01000044
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
22407
22491
+
Leu
TAG
[ENA]
¡û
>W1810367642
PVXQ01000080
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
547
631
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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