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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106791 (70 seq.)
>A171003589
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
2190212
2190297
+
Ser
GGA
-
¡û
>A171004652
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
842799
842714
-
Ser
GGA
-
¡û
>A171004954
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3131673
3131588
-
Ser
GGA
-
¡û
>A171005004
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3086371
3086286
-
Ser
GGA
-
¡û
>A171005056
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3165655
3165570
-
Ser
GGA
-
¡û
>A171005098
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3218517
3218602
+
Ser
GGA
-
¡û
>A171005195
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
828030
828114
+
Ser
GGA
-
¡û
>A171005361
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
646668
646751
+
Ser
GGA
-
¡û
>WENV180038056
FVAA012422441
[FVAA] soil metagenome; Soil
86
1
-
Ser
GGA
[ENA]
¢þ
>At0957
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
16400
16482
+
Ser
GGA
[Ensembl]
¡û
>At1519
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2557489
2557571
+
Ser
GGA
[Ensembl]
¡û
>WENV170717170
LSQX01026917
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18114
18200
+
Ser
GGA
[ENA]
¢þ
>WENV170784227
MCHG01000167
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
29392
29478
+
Ser
GGA
[ENA]
¢þ
>W1910229864
FOHQ01000007
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
103018
103101
+
Ser
GGA
[ENA]
¡û
>W1910569233
JJOR01000060
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
20887
20972
+
Ser
GGA
[ENA]
¡û
>W1910569322
JJOS01000118
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
5070
4985
-
Ser
GGA
[ENA]
¡û
>W1910569359
JJOT01000062
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
83792
83877
+
Ser
GGA
[ENA]
¡û
>W1910569410
JJOU01000152
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
42686
42771
+
Ser
GGA
[ENA]
¡û
>W1910569528
JJOX01000019
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
3319
3404
+
Ser
GGA
[ENA]
¡û
>W1910569609
JJOY01000039
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
57830
57745
-
Ser
GGA
[ENA]
¡û
>W1910569658
JJOZ01000045
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
3445
3360
-
Ser
GGA
[ENA]
¡û
>W1910569681
JJPA01000013
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
3266
3181
-
Ser
GGA
[ENA]
¡û
>W1910569770
JJPB01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
92283
92368
+
Ser
GGA
[ENA]
¡û
>W1910569829
JJPC01000148
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
32366
32451
+
Ser
GGA
[ENA]
¡û
>W1910569854
JJPD01000110
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
73941
74026
+
Ser
GGA
[ENA]
¡û
>W1910569931
JJPE01000152
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
69528
69613
+
Ser
GGA
[ENA]
¡û
>W1910570018
JJPG01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
30928
31013
+
Ser
GGA
[ENA]
¡û
>W1910570156
JJPJ01000044
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
20854
20939
+
Ser
GGA
[ENA]
¡û
>W1910570259
JJPL01000062
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
26829
26914
+
Ser
GGA
[ENA]
¡û
>W1910570333
JJPM01000261
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
19152
19237
+
Ser
GGA
[ENA]
¡û
>W1910570389
JJPN01000154
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
29310
29395
+
Ser
GGA
[ENA]
¡û
>W1910570420
JJPO01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
49244
49329
+
Ser
GGA
[ENA]
¡û
>W1910570477
JJPP01000124
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
20875
20960
+
Ser
GGA
[ENA]
¡û
>W1910570545
JJPQ01000181
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
52823
52738
-
Ser
GGA
[ENA]
¡û
>W1910570561
JJPR01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
45669
45754
+
Ser
GGA
[ENA]
¡û
>W1910570639
JJPS01000207
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
32206
32291
+
Ser
GGA
[ENA]
¡û
>W1910570655
JJPT01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
20833
20918
+
Ser
GGA
[ENA]
¡û
>W1910570790
JJPV01000126
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
20891
20976
+
Ser
GGA
[ENA]
¡û
>W1910570809
JJPW01000013
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
3504
3419
-
Ser
GGA
[ENA]
¡û
>W1910570857
JJPX01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
39852
39937
+
Ser
GGA
[ENA]
¡û
>W1910570939
JJPY01000099
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
54561
54646
+
Ser
GGA
[ENA]
¡û
>W1910570988
JJPZ01000135
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
54614
54699
+
Ser
GGA
[ENA]
¡û
>W1910571032
JJQA01000096
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
3505
3420
-
Ser
GGA
[ENA]
¡û
>W1910571214
JJQE01000077
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
73941
74026
+
Ser
GGA
[ENA]
¡û
>W1910571339
JJQG01000123
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
5373
5458
+
Ser
GGA
[ENA]
¡û
>W1910571404
JJQH01000205
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
3507
3422
-
Ser
GGA
[ENA]
¡û
>W1910571438
JJQI01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
3507
3422
-
Ser
GGA
[ENA]
¡û
>W1910571498
JJQJ01000177
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
1551
1466
-
Ser
GGA
[ENA]
¡û
>W1910571534
JJQK01000154
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
26311
26396
+
Ser
GGA
[ENA]
¡û
>W1910571578
JJQL01000021
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
36024
36109
+
Ser
GGA
[ENA]
¡û
>W1910571627
JJQM01000052
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
5067
4982
-
Ser
GGA
[ENA]
¡û
>W1910571697
JJQN01000065
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
26769
26854
+
Ser
GGA
[ENA]
¡û
>W1910571777
JJQO01000315
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
5067
4982
-
Ser
GGA
[ENA]
¡û
>W1910571846
JJQP01000332
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
33186
33271
+
Ser
GGA
[ENA]
¡û
>W1910571858
JJQQ01000033
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
3511
3426
-
Ser
GGA
[ENA]
¡û
>W1910571921
JJQR01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
5067
4982
-
Ser
GGA
[ENA]
¡û
>W1910571984
JJQS01000073
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
20900
20985
+
Ser
GGA
[ENA]
¡û
>W1910572021
JJQT01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
20863
20948
+
Ser
GGA
[ENA]
¡û
>W1910572150
JJQV01000149
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
20911
20996
+
Ser
GGA
[ENA]
¡û
>W1910572178
JJQW01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
5067
4982
-
Ser
GGA
[ENA]
¡û
>W1910572215
JJQX01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
20857
20942
+
Ser
GGA
[ENA]
¡û
>W1910572291
JJQY01000157
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
13428
13343
-
Ser
GGA
[ENA]
¡û
>W1910572305
JJQZ01000054
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
20904
20989
+
Ser
GGA
[ENA]
¡û
>W1910572367
JJRA01000063
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
20905
20990
+
Ser
GGA
[ENA]
¡û
>W1910572431
JJRB01000115
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
5067
4982
-
Ser
GGA
[ENA]
¡û
>W1910575043
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1893055
1893140
+
Ser
GGA
[ENA]
¡û
>W1910575247
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
99814
99897
+
Ser
GGA
[ENA]
¡û
>W1910694784
MDTP02000068
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
29392
29477
+
Ser
GGA
[ENA]
¡û
>W1610000145
AADH02000012
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
4003
4087
+
Ser
GGA
[ENA]
¡û
>W1610670269
LKAZ01000054
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
237263
237178
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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