This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113767 (238 seq.)
>W1710889736
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
101120
101037
-
Tyr
GTA
[ENA]
¡û
>W1711373822
MDVX01000002
Alphaproteobacteria
Neptunicoccus sediminis CY02 [MDVX]
287341
287258
-
Tyr
GTA
[ENA]
¡û
>W1711388546
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2380807
2380724
-
Pseudo
GTA
[ENA]
¡û
>W1711388588
MEHT01000045
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
194015
193932
-
Pseudo
GTA
[ENA]
¡û
>W1711572462
MNBW01000020
Alphaproteobacteria
Nioella nitratireducens [MNBW]
15263
15346
+
Tyr
GTA
[ENA]
¡û
>W1711585227
MNZL01000123
Alphaproteobacteria
Rhodobacterales bacterium CG2_30_65_12 [MNZL]
14817
14734
-
Pseudo
GTA
[ENA]
¡û
>W1711642832
MPZQ01000002
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
565015
565098
+
Tyr
GTA
[ENA]
¡û
>W1711642880
MPZR01000002
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
225992
225909
-
Tyr
GTA
[ENA]
¡û
>W1711643027
MPZU01000004
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
431287
431370
+
Tyr
GTA
[ENA]
¡û
>W1711643059
MPZV01000002
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
389299
389382
+
Tyr
GTA
[ENA]
¡û
>W1711643152
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
783205
783288
+
Tyr
GTA
[ENA]
¡û
>W1711712853
MTCO01000093
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
11351
11434
+
Pseudo
GTA
[ENA]
¡û
>W1711947202
NBNX01000003
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
263181
263264
+
Tyr
GTA
[ENA]
¡û
>W1711947252
NBNY01000002
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
364162
364079
-
Tyr
GTA
[ENA]
¡û
>W1711947291
NBNZ01000002
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
339461
339378
-
Tyr
GTA
[ENA]
¡û
>W1711947330
NBOA01000002
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
342159
342076
-
Tyr
GTA
[ENA]
¡û
>W1711947395
NBOB01000006
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
356841
356758
-
Tyr
GTA
[ENA]
¡û
>W1711958986
NBXF01000002
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
35948
35865
-
Tyr
GTA
[ENA]
¡û
>C171094354
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
3436409
3436492
+
Tyr
GTA
-
¡û
>C172000044
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3784057
3783974
-
Tyr
GTA
-
¡û
>C172000184
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
178992
178909
-
Tyr
GTA
-
¡û
>W131158896
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2216446
2216529
+
Tyr
GTA
[ENA]
¡û
>C027987
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
964835
964918
+
Tyr
GTA
[Ensembl]
¡û
>WENV180039712
LLBY010134757
[LLBY] soil metagenome; soil from tomato rhizosphere
210
293
+
Tyr
GTA
[ENA]
¢þ
>WENV180041178
LLBZ010059016
[LLBZ] soil metagenome; soil from tomato rhizosphere
9542
9459
-
Tyr
GTA
[ENA]
¢þ
>WENV180103341
OAPA01017916
[OAPA] marine metagenome; ENVO:00002010
248
165
-
Tyr
GTA
[ENA]
¢þ
>WENV180342931
OBLJ01202469
[OBLJ] soil metagenome; Clay
215
132
-
Tyr
GTA
[ENA]
¢þ
>WENV180357541
OBNN01026000
[OBNN] marine metagenome; Coastal water
125
208
+
Tyr
GTA
[ENA]
¢þ
>WENV180359804
OBNS01034719
[OBNS] marine metagenome; Seawater
393
310
-
Tyr
GTA
[ENA]
¢þ
>WENV180360946
OBNU01067655
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
107
190
+
Tyr
GTA
[ENA]
¢þ
>WENV180361032
OBNU01092134
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
346
263
-
Tyr
GTA
[ENA]
¢þ
>WENV180370681
OBOH01173941
[OBOH] marine metagenome; ENVO:00002010
8
91
+
Tyr
GTA
[ENA]
¢þ
>WENV180376742
OBOM01068307
[OBOM] marine metagenome; Seawater
208
291
+
Tyr
GTA
[ENA]
¢þ
>WENV180381887
OBOS01038515
[OBOS] marine metagenome; ENVO 00002150
354
437
+
Tyr
GTA
[ENA]
¢þ
>WENV180384144
OBOW01018967
[OBOW] marine metagenome; seawater
54
137
+
Tyr
GTA
[ENA]
¢þ
>WENV181120472
OEFK01002184
[OEFK] marine metagenome; ENVO:00002010 seawater
1206
1123
-
Tyr
GTA
[ENA]
¢þ
>WENV181168362
OEIU01302557
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
158
+
Tyr
GTA
[ENA]
¢þ
>WENV181170943
OEIV010115994
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
614
531
-
Tyr
GTA
[ENA]
¢þ
>WENV181233704
OFET01000053
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
64000
63917
-
Tyr
GTA
[ENA]
¢þ
>WENV181233968
OFET01000470
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
5230
5147
-
Tyr
GTA
[ENA]
¢þ
>WENV181233994
OFET01000660
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
7728
7811
+
Tyr
GTA
[ENA]
¢þ
>WENV181234318
OFEU01000035
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
51122
51205
+
Tyr
GTA
[ENA]
¢þ
>WENV181234594
OFEU01000512
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
6811
6728
-
Tyr
GTA
[ENA]
¢þ
>WENV181293920
OFHG01041485
[OFHG] soil metagenome; Clay
161
78
-
Tyr
GTA
[ENA]
¢þ
>WENV181411958
OGCI01064459
[OGCI] hot springs metagenome; Hot spring water
235
318
+
Tyr
GTA
[ENA]
¢þ
>WENV181416494
OGCL01093490
[OGCL] hot springs metagenome; Hot spring water
289
206
-
Tyr
GTA
[ENA]
¢þ
>WENV182541655
OJAU01000282
[OJAU] seawater metagenome; Sea water
4336
4253
-
Tyr
GTA
[ENA]
¢þ
>WENV182543805
OJBD01000001
[OJBD] seawater metagenome; Sea water
202287
202370
+
Tyr
GTA
[ENA]
¢þ
>WENV182545919
OJBO01000111
[OJBO] seawater metagenome; Sea water
22622
22705
+
Tyr
GTA
[ENA]
¢þ
>WENV182546564
OJBP01000194
[OJBP] seawater metagenome; Sea water
37985
38068
+
Tyr
GTA
[ENA]
¢þ
>WENV182549357
OJBY01000399
[OJBY] seawater metagenome; Sea water
8575
8492
-
Tyr
GTA
[ENA]
¢þ
>WENV182579255
OJGS01003349
[OJGS] seawater metagenome; Sea water
4068
3985
-
Tyr
GTA
[ENA]
¢þ
>WENV183060581
OLHY01000410
[OLHY] seawater metagenome; Sea water
1984
1901
-
Tyr
GTA
[ENA]
¢þ
>WENV183516399
OMKS01173297
[OMKS] sediment metagenome; hot spring sediment
550
467
-
Tyr
GTA
[ENA]
¢þ
>WENV183706534
PDWI01004596
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6464
6381
-
Tyr
GTA
[ENA]
¢þ
>WENV183710804
PDWI01053772
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
364
281
-
Tyr
GTA
[ENA]
¢þ
>WENV183714551
PDWI01190276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
89
6
-
Tyr
GTA
[ENA]
¢þ
>WENV183720320
PDWJ01031471
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2678
2761
+
Tyr
GTA
[ENA]
¢þ
>WENV183721384
PDWJ01066473
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
10
93
+
Tyr
GTA
[ENA]
¢þ
>WENV183731041
PJTS01004883
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
381
298
-
Tyr
GTA
[ENA]
¢þ
>WENV183732654
PJTX01004990
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1334
1251
-
Tyr
GTA
[ENA]
¢þ
>WENV183733615
PJTY01006776
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1607
1524
-
Tyr
GTA
[ENA]
¢þ
>WENV183748309
PPFU01027680
[PPFU] hypolithon metagenome; Antarctic Hypolithon
84
1
-
Tyr
GTA
[ENA]
¢þ
>WENV183750190
PPFU01269390
[PPFU] hypolithon metagenome; Antarctic Hypolithon
323
240
-
Tyr
GTA
[ENA]
¢þ
>WENV170266262
CERE01055073
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2663
2746
+
Tyr
GTA
[ENA]
¢þ
>WENV170486475
CEVN01282453
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
124
-
Tyr
GTA
[ENA]
¢þ
>WENV170564862
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
101120
101037
-
Tyr
GTA
[ENA]
¢þ
>WENV170705273
LLEQ01002467
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
620
703
+
Tyr
GTA
[ENA]
¢þ
>WENV170725942
LSQX01361746
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2508
2591
+
Tyr
GTA
[ENA]
¢þ
>WENV170806866
MDSW01088464
[MDSW] marine metagenome; seawater
6912
6995
+
Tyr
GTA
[ENA]
¢þ
>W09200014
AAIT01000010
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
22490
22407
-
Tyr
GTA
[ENA]
¡û
>C181049354
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
1964262
1964345
+
Tyr
GTA
-
¡û
>C181052319
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
806601
806684
+
Tyr
GTA
-
¡û
>C181084430
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
989243
989160
-
Tyr
GTA
-
¡û
>C181099809
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
197394
197311
-
Tyr
GTA
-
¡û
>C181108004
CP024899
Alphaproteobacteria
Rhodobaca barguzinensis alga05 [CP024899]
2823746
2823663
-
Tyr
GTA
-
¡û
>C181116784
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
2281218
2281135
-
Tyr
GTA
-
¡û
>C181119672
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
2010168
2010251
+
Tyr
GTA
-
¡û
>C181190854
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
685451
685368
-
Tyr
GTA
-
¡û
>C181203418
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1917633
1917550
-
Tyr
GTA
-
¡û
>C191073597
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2200642
2200559
-
Tyr
GTA
-
¡û
>C191131976
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
3117343
3117426
+
Tyr
GTA
-
¡û
>C191134409
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
964556
964639
+
Tyr
GTA
-
¡û
>C191144265
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
1597722
1597639
-
Tyr
GTA
-
¡û
>C191159603
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
578697
578614
-
Tyr
GTA
-
¡û
>W142000117
AQQW01000009
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
210076
210159
+
Tyr
GTA
[ENA]
¡û
>W142000102
AOLV01000010
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
411635
411718
+
Tyr
GTA
[ENA]
¡û
>W142000118
AQRC01000001
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
234845
234762
-
Tyr
GTA
[ENA]
¡û
>W142000144
AUND01000023
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
376546
376629
+
Tyr
GTA
[ENA]
¡û
>W142000572
AYXI01000210
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
74278
74361
+
Tyr
GTA
[ENA]
¡û
>W142000591
AZVA01000004
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
93810
93727
-
Tyr
GTA
[ENA]
¡û
>W142000722
JAEM01000033
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
4535
4452
-
Tyr
GTA
[ENA]
¡û
>W142000723
JAEN01000007
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
3158
3075
-
Tyr
GTA
[ENA]
¡û
>W142000731
JAGK01000030
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
39142
39225
+
Tyr
GTA
[ENA]
¡û
>W142000756
JFGS01000001
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
155123
155206
+
Tyr
GTA
[ENA]
¡û
>W142000800
JGYG01000001
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
488281
488198
-
Tyr
GTA
[ENA]
¡û
>W142000982
JHWH01000021
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
86061
86144
+
Tyr
GTA
[ENA]
¡û
>W1910442927
FWFQ01000002
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
99384
99467
+
Tyr
GTA
[ENA]
¡û
>W1910443018
FWFS01000004
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
88701
88784
+
Tyr
GTA
[ENA]
¡û
>W1910443196
FWFW01000005
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
77420
77503
+
Tyr
GTA
[ENA]
¡û
>W1910443329
FWFZ01000006
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
174537
174454
-
Tyr
GTA
[ENA]
¡û
>C142000010
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
2209176
2209093
-
Tyr
GTA
[Ensembl]
¡û
>W1910547064
FZNM01000003
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
458975
458892
-
Tyr
GTA
[ENA]
¡û
>W1910549005
FZOY01000003
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
4195
4112
-
Tyr
GTA
[ENA]
¡û
>W1910549361
FZPF01000006
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
87333
87250
-
Tyr
GTA
[ENA]
¡û
>W1910549852
FZQB01000001
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
444064
443981
-
Tyr
GTA
[ENA]
¡û
>W1910808419
MUAV01000044
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
1604
1521
-
Tyr
GTA
[ENA]
¡û
>W1911245307
NSJZ01000001
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
447608
447691
+
Tyr
GTA
[ENA]
¡û
>W1911283632
NTJD01000003
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
71760
71677
-
Tyr
GTA
[ENA]
¡û
>W1911397903
NWMQ01000003
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
160368
160285
-
Tyr
GTA
[ENA]
¡û
>W1911495038
OBMN01000007
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
168782
168865
+
Tyr
GTA
[ENA]
¡û
>W1911495096
OBMP01000001
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
523721
523804
+
Tyr
GTA
[ENA]
¡û
>W1911495379
OBMT01000017
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
2054
1971
-
Tyr
GTA
[ENA]
¡û
>W1911538654
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
2308274
2308357
+
Tyr
GTA
[ENA]
¡û
>W1911575817
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
3322489
3322572
+
Tyr
GTA
[ENA]
¡û
>W1911652524
QBBT01000053
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
73205
73288
+
Tyr
GTA
[ENA]
¡û
>W1911653465
QDFI01000021
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
51007
51090
+
Tyr
GTA
[ENA]
¡û
>W1911696504
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
545274
545357
+
Tyr
GTA
[ENA]
¡û
>W1911698516
QNRC01000033
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
26795
26878
+
Tyr
GTA
[ENA]
¡û
>W1911705513
QOKZ01000004
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
149022
149105
+
Tyr
GTA
[ENA]
¡û
>W1911718096
QQVY01000003
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
245842
245759
-
Tyr
GTA
[ENA]
¡û
>W1911749925
QWJJ01000012
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
81900
81983
+
Tyr
GTA
[ENA]
¡û
>W1911810980
QZCG01000015
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
19924
20007
+
Tyr
GTA
[ENA]
¡û
>W1911813190
QZEV01000010
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
10128
10045
-
Tyr
GTA
[ENA]
¡û
>W1911813246
QZEW01000032
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
26795
26878
+
Tyr
GTA
[ENA]
¡û
>W1810090263
PGFI01000012
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
277337
277420
+
Tyr
GTA
[ENA]
¡û
>W1810120357
PHSN01000024
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
73254
73337
+
Tyr
GTA
[ENA]
¡û
>W1810194102
PKOJ01000006
Alphaproteobacteria
Amylibacter cionae m18 [PKOJ]
159161
159078
-
Tyr
GTA
[ENA]
¡û
>W1810235961
PPGA01000001
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
84152
84235
+
Tyr
GTA
[ENA]
¡û
>W1810268910
PRDS01000011
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
36484
36401
-
Tyr
GTA
[ENA]
¡û
>W1810351382
PVEP01000005
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
217712
217795
+
Tyr
GTA
[ENA]
¡û
>W1810356713
PVND01000001
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
134388
134471
+
Tyr
GTA
[ENA]
¡û
>W1810364323
PVTD01000002
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
125838
125921
+
Tyr
GTA
[ENA]
¡û
>W1810385265
PXNQ01000006
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
229343
229260
-
Tyr
GTA
[ENA]
¡û
>W1810426254
PYWA01000004
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
18745
18828
+
Tyr
GTA
[ENA]
¡û
>W1810444986
PZKF01000008
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
8012
7929
-
Tyr
GTA
[ENA]
¡û
>W1810464036
QAAA01000010
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
9971
10054
+
Tyr
GTA
[ENA]
¡û
>W1810477361
QAOT01000003
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
120917
120834
-
Tyr
GTA
[ENA]
¡û
>W1810486251
QAXT01000002
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
289095
289012
-
Tyr
GTA
[ENA]
¡û
>W1810486761
QAYC01000007
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
225250
225333
+
Tyr
GTA
[ENA]
¡û
>W1810503936
QBKN01000001
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
90944
90861
-
Tyr
GTA
[ENA]
¡û
>W1810543595
QDKM01000003
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
333873
333956
+
Tyr
GTA
[ENA]
¡û
>W1810577989
QEOR01000001
Alphaproteobacteria
Thalassobacter stenotrophicus LXJ116 [QEOR]
267700
267617
-
Tyr
GTA
[ENA]
¡û
>W1810580446
QETF01000006
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
132648
132565
-
Tyr
GTA
[ENA]
¡û
>W1810583997
QEYD01000011
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
61442
61359
-
Tyr
GTA
[ENA]
¡û
>W1810584510
QFBB01000001
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
290389
290472
+
Tyr
GTA
[ENA]
¡û
>W1810585321
QFCQ01000065
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
10359
10442
+
Tyr
GTA
[ENA]
¡û
>W1810596888
QGGW01000004
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
187886
187969
+
Tyr
GTA
[ENA]
¡û
>W1810603243
QGKU01000048
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
182724
182807
+
Tyr
GTA
[ENA]
¡û
>W1810606084
QGNX01000009
Alphaproteobacteria
Oceanibium sediminis O448 [QGNX]
70990
71073
+
Tyr
GTA
[ENA]
¡û
>W1810667417
QJPK01000003
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
18856
18939
+
Tyr
GTA
[ENA]
¡û
>W1810672428
QJTK01000010
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
52980
53063
+
Tyr
GTA
[ENA]
¡û
>W1810684514
QKYL01000212
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
162138
162055
-
Tyr
GTA
[ENA]
¡û
>W1810685790
QKZO01000001
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
41597
41680
+
Tyr
GTA
[ENA]
¡û
>W1810685904
QKZQ01000003
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
80712
80795
+
Tyr
GTA
[ENA]
¡û
>W1810697121
QLUV01000006
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
14171
14254
+
Tyr
GTA
[ENA]
¡û
>W1810707382
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
62465
62382
-
Tyr
GTA
[ENA]
¡û
>W1810721656
QNSD01000038
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
6074
5991
-
Tyr
GTA
[ENA]
¡û
>W1810722993
QNVX01000053
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
69445
69528
+
Tyr
GTA
[ENA]
¡û
>W1810735799
QOLB01000096
Alphaproteobacteria
Candidatus Halocynthiibacter alkanivorans Bin25-node5 [QOLB]
210
127
-
Tyr
GTA
[ENA]
¡û
>W1810750754
QOZU01000105
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
10250
10333
+
Tyr
GTA
[ENA]
¡û
>W1810762346
QPML01000207
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
10349
10432
+
Tyr
GTA
[ENA]
¡û
>W1810862264
QTUJ01000003
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
390327
390410
+
Tyr
GTA
[ENA]
¡û
>W1810884855
QUMX01000010
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
109902
109985
+
Tyr
GTA
[ENA]
¡û
>W1810917926
QWEY01000007
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
100684
100601
-
Tyr
GTA
[ENA]
¡û
>C152000016
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2215249
2215166
-
Tyr
GTA
[Ensembl]
¡û
>W1511348576
JRKN01000048
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
567
484
-
Tyr
GTA
[ENA]
¡û
>W1511348614
JRKO01000031
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
17459
17376
-
Tyr
GTA
[ENA]
¡û
>W1511348719
JRKQ01000253
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
407
490
+
Tyr
GTA
[ENA]
¡û
>C11200021
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2315389
2315472
+
Tyr
GTA
[Ensembl]
¡û
>W11200057
AEPN01000014
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
86658
86741
+
Tyr
GTA
[ENA]
¡û
>C162000037
CP012023
Alphaproteobacteria
Celeribacter marinus IMCC12053 [CP012023]
864741
864824
+
Tyr
GTA
[Ensembl]
¡û
>C162000042
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2830067
2829984
-
Tyr
GTA
[Ensembl]
¡û
>W122000103
AJFB01000968
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
520
437
-
Tyr
GTA
[ENA]
¡û
>W1610750114
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
101120
101037
-
Tyr
GTA
[ENA]
¡û
>W1620000126
BBFH01000556
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
276
359
+
Tyr
GTA
[ENA]
¡û
>W1620001198
LJSF01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
145770
145853
+
Tyr
GTA
[ENA]
¡û
>W1620001199
LJSV01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
20084
20167
+
Tyr
GTA
[ENA]
¡û
>W1620001200
LJSY01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
62924
62841
-
Tyr
GTA
[ENA]
¡û
>W1620001254
LLWQ01000086
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
54438
54521
+
Tyr
GTA
[ENA]
¡û
>W1620001311
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
49842
49925
+
Tyr
GTA
[ENA]
¡û
>W1620001342
LOAS01000009
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
500
417
-
Tyr
GTA
[ENA]
¡û
>W1620001620
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>WENV078466
AAGA01018075
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
316
233
-
Tyr
GTA
[ENA]
>W1720000039
AQQQ01000006
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
213192
213109
-
Tyr
GTA
[ENA]
¡û
>W1720000091
BBFH01000556
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
276
359
+
Tyr
GTA
[ENA]
¡û
>W1720000941
FNAH01000006
Alphaproteobacteria
Paracoccus isoporae [FNAH]
179686
179769
+
Tyr
GTA
[ENA]
¡û
>W1720000945
FNBL01000002
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
320392
320309
-
Tyr
GTA
[ENA]
¡û
>W1720000965
FNEA01000026
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
13902
13819
-
Tyr
GTA
[ENA]
¡û
>W1720000969
FNEK01000027
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
13458
13375
-
Tyr
GTA
[ENA]
¡û
>W1720000976
FNFV01000005
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
183691
183608
-
Tyr
GTA
[ENA]
¡û
>W1720000977
FNGE01000025
Alphaproteobacteria
Paracoccus chinensis [FNGE]
6398
6315
-
Tyr
GTA
[ENA]
¡û
>W1720001000
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
193769
193686
-
Tyr
GTA
[ENA]
¡û
>W1720001002
FNOB01000009
Alphaproteobacteria
Allgaiera indica [FNOB]
193393
193476
+
Tyr
GTA
[ENA]
¡û
>W1720001055
FODE01000006
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
137956
138039
+
Tyr
GTA
[ENA]
¡û
>W1720001075
FOHO01000001
Alphaproteobacteria
Paracoccus homiensis [FOHO]
127261
127344
+
Tyr
GTA
[ENA]
¡û
>W1720001104
FOPU01000017
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
69798
69881
+
Tyr
GTA
[ENA]
¡û
>W1720001113
FOSM01000001
Alphaproteobacteria
Celeribacter marinus [FOSM]
17731
17814
+
Tyr
GTA
[ENA]
¡û
>W1720001128
FOWA01000032
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
39142
39225
+
Tyr
GTA
[ENA]
¡û
>W1720001140
FOYK01000026
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
13884
13801
-
Tyr
GTA
[ENA]
¡û
>W1720001200
FTMK01000019
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
2645
2562
-
Tyr
GTA
[ENA]
¡û
>W1720001208
FTOM01000007
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
168782
168865
+
Tyr
GTA
[ENA]
¡û
>W1720001209
FTOT01000002
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
319644
319727
+
Tyr
GTA
[ENA]
¡û
>W1720001210
FTOU01000001
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
641366
641283
-
Tyr
GTA
[ENA]
¡û
>W1720001234
FXAQ01000008
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
112089
112172
+
Tyr
GTA
[ENA]
¡û
>W1720001304
JPKW01000002
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
326009
325926
-
Tyr
GTA
[ENA]
¡û
>W1720001622
LJSF01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
145770
145853
+
Tyr
GTA
[ENA]
¡û
>W1720001623
LJSV01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
20084
20167
+
Tyr
GTA
[ENA]
¡û
>W1720001624
LJSY01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
62924
62841
-
Tyr
GTA
[ENA]
¡û
>W1720001674
LLWQ01000086
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
54438
54521
+
Tyr
GTA
[ENA]
¡û
>W1720001730
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
49842
49925
+
Tyr
GTA
[ENA]
¡û
>W1720001760
LOAS01000009
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
500
417
-
Tyr
GTA
[ENA]
¡û
>W1720002074
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>W1720002787
MEES01000018
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
21338
21421
+
Tyr
GTA
[ENA]
¡û
>W1720002906
MJAP01000013
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
182483
182566
+
Tyr
GTA
[ENA]
¡û
>W1720003116
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
1224543
1224460
-
Tyr
GTA
[ENA]
¡û
>W1720003118
MPZW01000001
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
360483
360400
-
Tyr
GTA
[ENA]
¡û
>W1720003162
MSPP01000003
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
549374
549291
-
Tyr
GTA
[ENA]
¡û
>W1720003167
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3436268
3436351
+
Tyr
GTA
[ENA]
¡û
>W1720003176
MTBG01000001
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
66679
66596
-
Tyr
GTA
[ENA]
¡û
>W1720003996
NIPU01000014
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
306452
306369
-
Tyr
GTA
[ENA]
¡û
>W1720003998
NIPV01000011
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
28624
28707
+
Tyr
GTA
[ENA]
¡û
>W1720004000
NIPW01000028
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
47613
47530
-
Tyr
GTA
[ENA]
¡û
>W1720004001
NIPX01000002
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
155207
155290
+
Tyr
GTA
[ENA]
¡û
>W1720004002
NIPY01000021
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
65223
65140
-
Tyr
GTA
[ENA]
¡û
>W1720004004
NIPZ01000028
Alphaproteobacteria
Paracoccus yeei [NIPZ]
78246
78329
+
Tyr
GTA
[ENA]
¡û
>W1710015530
AQQT01000002
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
278818
278901
+
Pseudo
GTA
[ENA]
¡û
>W1710508103
FMVT01000010
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
21361
21444
+
Tyr
GTA
[ENA]
¡û
>W1710540937
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
81204
81287
+
Tyr
GTA
[ENA]
¡û
>W1710552368
FOGU01000006
Alphaproteobacteria
Tranquillimonas rosea roseus [FOGU]
207261
207178
-
Pseudo
GTA
[ENA]
¡û
>W1710555570
FOJO01000045
Alphaproteobacteria
Paracoccus halophilus [FOJO]
15627
15710
+
Tyr
GTA
[ENA]
¡û
>W1710557716
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
431592
431675
+
Tyr
GTA
[ENA]
¡û
>W1710581762
FPKI01000009
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
112170
112253
+
Tyr
GTA
[ENA]
¡û
>W1710592361
FRCK01000001
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
205589
205506
-
Tyr
GTA
[ENA]
¡û
>W1710599326
FTOQ01000002
Alphaproteobacteria
Roseivivax lentus [FTOQ]
146458
146375
-
Pseudo
GTA
[ENA]
¡û
>W132000311
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
1292540
1292457
-
Tyr
GTA
[ENA]
¡û
>W132000018
AMRK01000002
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
167050
167133
+
Tyr
GTA
[ENA]
¡û
>W132000275
AUCM01000004
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
2414
2331
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK