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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11470 (47 seq.)
>W1710865292
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2564783
2564691
-
Ser
GCT
[ENA]
¡û
>W1710866522
LMHN01000015
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
371341
371433
+
Ser
GCT
[ENA]
¡û
>W1711052112
LRSP01000017
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
32672
32764
+
Ser
GCT
[ENA]
¡û
>W1711055157
LRUJ01000013
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
79236
79144
-
Ser
GCT
[ENA]
¡û
>W1711077952
LSMI01000031
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
237876
237784
-
Ser
GCT
[ENA]
¡û
>W1711658893
MQNQ01000444
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
2270
2362
+
Ser
GCT
[ENA]
¡û
>C171115727
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
1660059
1660151
+
Ser
GCT
-
¡û
>W131059156
ANGE01000003
Betaproteobacteria
Bordetella holmesii 44057 [ANGE]
7440
7348
-
Ser
GCT
[ENA]
¡û
>W131089854
AOEW01000002
Betaproteobacteria
Bordetella holmesii F627 [AOEW]
49622
49530
-
Ser
GCT
[ENA]
¡û
>WENV180006386
FLRY01025219
[FLRY] metagenome; saliva
99
7
-
Ser
GCT
[ENA]
¢þ
>WENV183727234
PJTO01016543
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
198
106
-
Ser
GCT
[ENA]
¢þ
>WENV183742082
PJUH01000215
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
19337
19429
+
Ser
GCT
[ENA]
¢þ
>WENV183742622
PJUI01000034
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
79070
79162
+
Ser
GCT
[ENA]
¢þ
>W141401955
JDTF01000004
Betaproteobacteria
Bordetella holmesii 1058 [JDTF]
1748746
1748654
-
Ser
GCT
[ENA]
¡û
>WENV170784507
MCND01003244
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
496
404
-
Ser
GCT
[ENA]
¢þ
>WENV170966876
MTEY01012231
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
2013
1921
-
Ser
GCT
[ENA]
¢þ
>W141486098
JFZZ01000073
Betaproteobacteria
Bordetella holmesii CDC-H585-BH [JFZZ]
8054
7962
-
Ser
GCT
[ENA]
¡û
>W141486162
JGAA01000171
Betaproteobacteria
Bordetella holmesii CDC-H635-BH [JGAA]
49240
49332
+
Ser
GCT
[ENA]
¡û
>C181034423
CP018899
Betaproteobacteria
Bordetella holmesii [CP018899]
2433141
2433049
-
Ser
GCT
-
¡û
>C181045606
CP020647
Betaproteobacteria
Bordetella holmesii F028 [CP020647]
2434411
2434319
-
Ser
GCT
-
¡û
>C181128265
CP026124
Betaproteobacteria
Achromobacter sp. AONIH1 [CP026124]
5774800
5774708
-
Ser
GCT
-
¡û
>C191012250
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3235543
3235451
-
Ser
GCT
-
¡û
>C191035939
CP025522
Betaproteobacteria
Bordetella avium JBBA [CP025522]
2794875
2794783
-
Ser
GCT
-
¡û
>W141520643
JGVZ01000047
Betaproteobacteria
Bordetella holmesii CDC-H629-BH [JGVZ]
48928
49020
+
Ser
GCT
[ENA]
¡û
>C191129226
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
4499833
4499741
-
Ser
GCT
-
¡û
>W141531924
JHEO01000124
Betaproteobacteria
Bordetella hinzii CA90 BAL1384 [JHEO]
2342
2434
+
Ser
GCT
[ENA]
¡û
>W141532184
JHES01000003
Betaproteobacteria
Bordetella hinzii 1277 [JHES]
451102
451194
+
Ser
GCT
[ENA]
¡û
>W141621701
JJNW01000354
Betaproteobacteria
Bordetella holmesii H620 [JJNW]
7342
7434
+
Ser
GCT
[ENA]
¡û
>W141697641
JMGZ01000082
Betaproteobacteria
Bordetella holmesii CDC-H809-BH [JMGZ]
49232
49324
+
Ser
GCT
[ENA]
¡û
>W1910890788
NEVM01000005
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
1120958
1120866
-
Ser
GCT
[ENA]
¡û
>W1910891197
NEVU01000003
Betaproteobacteria
Bordetella genomosp. 12 12 AU6712 [NEVU]
747932
747840
-
Ser
GCT
[ENA]
¡û
>W1911641116
PYAL01000001
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
1471240
1471148
-
Ser
GCT
[ENA]
¡û
>W1911746147
QVSL01000004
Betaproteobacteria
Bordetella avium BA1 [QVSL]
206408
206500
+
Ser
GCT
[ENA]
¡û
>W1911746639
QVSU01000004
Betaproteobacteria
Bordetella avium BA11 [QVSU]
104240
104148
-
Ser
GCT
[ENA]
¡û
>W1911746812
QVSX01000005
Betaproteobacteria
Bordetella avium BA8 [QVSX]
67167
67075
-
Ser
GCT
[ENA]
¡û
>W1810692843
QLKW01000006
Betaproteobacteria
Bordetella avium HAMBI_2160 [QLKW]
206250
206342
+
Ser
GCT
[ENA]
¡û
>C151025418
CP007494
Betaproteobacteria
Bordetella holmesii ATCC 51541 [CP007494]
56629
56537
-
Ser
GCT
[Ensembl]
¡û
>C151090693
CP012076
Betaproteobacteria
Bordetella hinzii F582 [CP012076]
1243246
1243338
+
Ser
GCT
[Ensembl]
¡û
>C151090752
CP012077
Betaproteobacteria
Bordetella hinzii H568 [CP012077]
1226676
1226768
+
Ser
GCT
[Ensembl]
¡û
>C161094275
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
4332998
4332906
-
Ser
GCT
[Ensembl]
¡û
>W121111210
ALJE01000020
Betaproteobacteria
Achromobacter marplatensis HLE [ALJE]
43686
43778
+
Ser
GCT
[ENA]
¡û
>W1610727638
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2564783
2564691
-
Ser
GCT
[ENA]
¡û
>W1610728868
LMHN01000015
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
371341
371433
+
Ser
GCT
[ENA]
¡û
>W1610893300
LRSP01000017
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
32672
32764
+
Ser
GCT
[ENA]
¡û
>W1610896203
LRUJ01000013
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
79236
79144
-
Ser
GCT
[ENA]
¡û
>W1610916968
LSMI01000031
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
237876
237784
-
Ser
GCT
[ENA]
¡û
>W1710541660
FNYM01000017
Betaproteobacteria
Achromobacter sp. NFACC18-2 [FNYM]
3983
3891
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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