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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118271 (44 seq.)
>W1711024818
LRBG01000022
Betaproteobacteria
Paraburkholderia monticola [LRBG]
131742
131658
-
Leu
TAA
[ENA]
¡û
>W1711213172
LXJZ01000189
Betaproteobacteria
Paraburkholderia ginsengiterrae panaciterrae [LXJZ]
28788
28704
-
Leu
TAA
[ENA]
¡û
>W1711213198
LXKA01000121
Betaproteobacteria
Paraburkholderia ginsengiterrae [LXKA]
115810
115894
+
Leu
TAA
[ENA]
¡û
>W1711689293
MSDV01000037
Betaproteobacteria
Burkholderia sp. SRS-W-2-2016 [MSDV]
65038
64954
-
Leu
TAA
[ENA]
¡û
>W1711792398
MWJQ01000004
Betaproteobacteria
Burkholderia sp. A27 [MWJQ]
16589
16505
-
Leu
TAA
[ENA]
¡û
>W131202909
ASXI01000070
Betaproteobacteria
Paraburkholderia phenoliruptrix AC1100 [ASXI]
125027
125111
+
Leu
TAA
[ENA]
¡û
>WENV012769
AACY020348588
Marine microbial communities from Global Ocean Sampling (GOS)
153
67
-
Leu
TAA
[ENA]
>W141149719
AWZT01000009
Betaproteobacteria
Paraburkholderia dilworthii [AWZT]
122533
122617
+
Leu
TAA
[ENA]
¡û
>W141150407
AXAJ01000004
Betaproteobacteria
Burkholderia sp. WSM2230 [AXAJ]
96858
96774
-
Leu
TAA
[ENA]
¡û
>W141219875
AZXJ01000002
Betaproteobacteria
Burkholderia sp. JPY366 [AZXJ]
269862
269778
-
Leu
TAA
[ENA]
¡û
>W141235453
BAYC01000002
Betaproteobacteria
Paraburkholderia fungorum NBRC 102489 [BAYC]
643551
643467
-
Leu
TAA
[ENA]
¡û
>W141235488
BAYC01000063
Betaproteobacteria
Paraburkholderia fungorum NBRC 102489 [BAYC]
8202
8286
+
Leu
TAA
[ENA]
¡û
>CL170100173
CP012746
Betaproteobacteria
Paraburkholderia caribensis MBA4 [CP012746, CP012747]
3092198
3091827
-
Leu
TAA
[Ensembl]
¡û
>C181109118
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
1275359
1275443
+
Leu
TAA
-
¡û
>W141699727
JMIK01000001
Betaproteobacteria
Burkholderia sp. K24 [JMIK]
801422
801338
-
Leu
TAA
[ENA]
¡û
>W141699743
JMIK01000009
Betaproteobacteria
Burkholderia sp. K24 [JMIK]
1237747
1237831
+
Leu
TAA
[ENA]
¡û
>W1910500910
FYAI01000003
Betaproteobacteria
Paraburkholderia fungorum [FYAI]
8722
8806
+
Leu
TAA
[ENA]
¡û
>W1910664487
MCAS01000011
Betaproteobacteria
Paraburkholderia fungorum ES3-20 [MCAS]
75590
75674
+
Leu
TAA
[ENA]
¡û
>W1911497801
OCSR01000001
Betaproteobacteria
Burkholderia sp. OK233 [OCSR]
1079352
1079268
-
Leu
TAA
[ENA]
¡û
>W1911497931
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
2179933
2180017
+
Leu
TAA
[ENA]
¡û
>W1810045499
NBSN01000003
Betaproteobacteria
Paraburkholderia fungorum FDAARGOS_245 [NBSN]
2403375
2403291
-
Leu
TAA
[ENA]
¡û
>W1810045512
NBSN01000004
Betaproteobacteria
Paraburkholderia fungorum FDAARGOS_245 [NBSN]
1444316
1444232
-
Leu
TAA
[ENA]
¡û
>W1810200673
PNXY01000002
Betaproteobacteria
Paraburkholderia rhynchosiae WSM 3937 [PNXY]
98143
98227
+
Leu
TAA
[ENA]
¡û
>W1810368200
PVZM01000001
Betaproteobacteria
Paraburkholderia fungorum LMG 28183 [PVZM]
414965
414881
-
Leu
TAA
[ENA]
¡û
>W1810577323
QEOE01000003
Betaproteobacteria
Paraburkholderia sp. OV555 [QEOE]
272229
272313
+
Leu
TAA
[ENA]
¡û
>W1810626095
QHKS01000018
Betaproteobacteria
Paraburkholderia lacunae S27 [QHKS]
136438
136354
-
Leu
TAA
[ENA]
¡û
>C151004835
CP003863
Betaproteobacteria
Paraburkholderia phenoliruptrix BR3459a [CP003863, CP003864]
2838345
2838261
-
Leu
TAA
[Ensembl]
¡û
>C151036822
CP008760
Betaproteobacteria
Paraburkholderia xenovorans LB400 [CP008760, CP008761, CP008762]
3944745
3944829
+
Leu
TAA
[Ensembl]
¡û
>C151063581
CP010026
Betaproteobacteria
Paraburkholderia fungorum ATCC BAA-463 [CP010025, CP010026, CP010027]
3107274
3107358
+
Leu
TAA
[Ensembl]
¡û
>W10115248
ADJP01000006
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
102461
102545
+
Leu
TAA
[ENA]
¡û
>C11104338
CP002217
Betaproteobacteria
Burkholderia sp. CCGE1003 [CP002217]
1272522
1272606
+
Leu
TAA
[Ensembl]
¡û
>W11118834
ADJP01000006
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
102461
102545
+
Leu
TAA
[ENA]
¡û
>W1610206187
FCNZ02000002
Betaproteobacteria
Caballeronia telluris [FCNZ]
127392
127476
+
Leu
TAA
[ENA]
¡û
>W1610206762
FCOJ02000055
Betaproteobacteria
Caballeronia glebae LMG 29325 [FCOJ]
26411
26495
+
Leu
TAA
[ENA]
¡û
>W1610538831
JRZC01000335
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
17010
16926
-
Leu
TAA
[ENA]
¡û
>W1610614729
LGIO01000029
Betaproteobacteria
Burkholderia sp. ST111 [LGIO]
60424
60340
-
Leu
TAA
[ENA]
¡û
>W1610872930
LRBG01000022
Betaproteobacteria
Paraburkholderia monticola [LRBG]
131742
131658
-
Leu
TAA
[ENA]
¡û
>W1611000176
LXJZ01000189
Betaproteobacteria
Paraburkholderia ginsengiterrae panaciterrae [LXJZ]
28788
28704
-
Leu
TAA
[ENA]
¡û
>W1611000202
LXKA01000121
Betaproteobacteria
Paraburkholderia ginsengiterrae [LXKA]
115810
115894
+
Leu
TAA
[ENA]
¡û
>W1710207427
FCNZ02000002
Betaproteobacteria
Caballeronia telluris [FCNZ]
127392
127476
+
Leu
TAA
[ENA]
¡û
>W1710524542
FNIU01000038
Betaproteobacteria
Paraburkholderia sediminicola [FNIU]
53795
53879
+
Leu
TAA
[ENA]
¡û
>W1710526843
FNKP01000001
Betaproteobacteria
Paraburkholderia fungorum [FNKP]
2611527
2611443
-
Leu
TAA
[ENA]
¡û
>W1710589344
FRAB01000037
Betaproteobacteria
Paraburkholderia terricola [FRAB]
53541
53625
+
Leu
TAA
[ENA]
¡û
>W1710641738
JRZC01000335
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
17010
16926
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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