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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121639 (33 seq.)
>W1711317500
MAXI01000117
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
21518
21434
-
Tyr
GTA
[ENA]
¡û
>W131224759
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
180561
180645
+
Tyr
GTA
[ENA]
¡û
>W131224760
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
180906
180990
+
Tyr
GTA
[ENA]
¡û
>W131224762
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
280239
280323
+
Tyr
GTA
[ENA]
¡û
>W131224787
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
553312
553228
-
Tyr
GTA
[ENA]
¡û
>W131224853
AUDC01000010
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
602093
602009
-
Tyr
GTA
[ENA]
¡û
>W131224878
AUDC01000012
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
147471
147387
-
Tyr
GTA
[ENA]
¡û
>WENV180582455
OCMO01099524
[OCMO] metagenome; diffuse fluid
25
109
+
Tyr
GTA
[ENA]
¢þ
>WENV183514016
OMKS01010571
[OMKS] sediment metagenome; hot spring sediment
2061
1977
-
Tyr
GTA
[ENA]
¢þ
>WENV183516564
OMKS01206696
[OMKS] sediment metagenome; hot spring sediment
278
361
+
Tyr
GTA
[ENA]
¢þ
>WENV183712289
PDWI01094769
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1504
1588
+
Tyr
GTA
[ENA]
¢þ
>WENV183747325
PPCM01000912
[PPCM] marine sediment metagenome; marine sediment
1698
1614
-
Tyr
GTA
[ENA]
¢þ
>WENV183747609
PPCM01008773
[PPCM] marine sediment metagenome; marine sediment
816
732
-
Tyr
GTA
[ENA]
¢þ
>WENV170016916
BARS01026292
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
372
288
-
Tyr
GTA
[ENA]
¢þ
>WENV170645332
JMSV01000242
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
7021
7105
+
Tyr
GTA
[ENA]
¢þ
>WENV170645335
JMSV01000390
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
4341
4425
+
Tyr
GTA
[ENA]
¢þ
>WENV170645345
JMSV01000521
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
4031
3947
-
Tyr
GTA
[ENA]
¢þ
>WENV170645409
JMSV01003254
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
616
532
-
Tyr
GTA
[ENA]
¢þ
>W09117963
ACCN01000001
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
119298
119382
+
Tyr
GTA
[ENA]
¡û
>W09117971
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
365183
365267
+
Tyr
GTA
[ENA]
¡û
>W141778988
JONL01000001
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
479553
479469
-
Tyr
GTA
[ENA]
¡û
>C141011925
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3528296
3528212
-
Tyr
GTA
-
¡û
>C141011926
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3527951
3527867
-
Tyr
GTA
-
¡û
>C141011928
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3428616
3428532
-
Tyr
GTA
-
¡û
>C141011959
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1224111
1224027
-
Tyr
GTA
-
¡û
>C09104196
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
1302692
1302776
+
Tyr
GTA
[Ensembl]
¡û
>C09104238
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
4100472
4100556
+
Tyr
GTA
[Ensembl]
¡û
>C131018107
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3528296
3528212
-
Tyr
GTA
[Ensembl]
¡û
>C131018108
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3527951
3527867
-
Tyr
GTA
[Ensembl]
¡û
>C131018110
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3428616
3428532
-
Tyr
GTA
[Ensembl]
¡û
>C131018141
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1224111
1224027
-
Tyr
GTA
[Ensembl]
¡û
>W1710520962
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
495953
495869
-
Tyr
GTA
[ENA]
¡û
>W1710607126
FWZU01000002
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
628487
628571
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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